RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 SNRPA1P09661 255 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 CCDC192P0DO97 292 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 LARP1Q6PKG0 1096 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 KDM4FA0A1W2PPD8 638 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 CBX1P83916 185 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 HOMER1Q86YM7 354 aa13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 CDCA7Q9BWT1 371 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 RBM27Q9P2N5 1060 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-201ENST00000266546 DNAAF4Q8WXU2 420 aa13.73□□□□□ -0.21
CLSTN3-201ENST00000266546 CCDC66A2RUB6 948 aa13.73□□□□□ -0.21
CLSTN3-201ENST00000266546 TEX35Q5T0J7 233 aa13.73□□□□□ -0.21
CLSTN3-201ENST00000266546 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-201ENST00000266546 RNF20Q5VTR2 975 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 IL17REQ8NFR9 667 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 NCAPD2Q15021 1401 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 UBAP1LF5GYI3 381 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 F6X3S4 739 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 IFIT2P09913 472 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 ZBTB40Q9NUA8 1239 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 ZKSCAN5Q9Y2L8 839 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 FMN2Q9NZ56 1722 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 G3BP1Q13283 466 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 ERC1Q8IUD2 1116 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 CCDC112Q8NEF3 446 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 USP25Q9UHP3 1055 aa13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 ZHX1Q9UKY1 873 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-201ENST00000266546 MST1RQ04912 1400 aa13.71□□□□□ -0.21
CLSTN3-201ENST00000266546 GORABQ5T7V8 394 aa13.71□□□□□ -0.21
CLSTN3-201ENST00000266546 CCAR2Q8N163 923 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-201ENST00000266546 STARD3NLO95772 234 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 AKAP12Q02952 1782 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 KIF1AQ12756 1690 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 HS1BP3Q53T59 392 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 TAF7LQ5H9L4 462 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 UPF3BQ9BZI7 483 aaKnown RBP13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 LRRCC1Q9C099 1032 aa13.71□□□□□ -0.22
CLSTN3-201ENST00000266546 KIF6Q6ZMV9 814 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 CNTROBQ8N137 903 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 GOLGA6L1Q8N7Z2 621 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 PDCP20941 246 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 LRSAM1Q6UWE0 723 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 CCDC73Q6ZRK6 1079 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 ADAMTS2O95450 1211 aa13.7□□□□□ -0.22
CLSTN3-201ENST00000266546 WDR17Q8IZU2 1322 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 PRIM1P49642 420 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 CARD10Q9BWT7 1032 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 ARGLU1Q9NWB6 273 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 EXOC6BQ9Y2D4 811 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 CHD2O14647 1828 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 ALDH1L1O75891 902 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 LGR6Q9HBX8 967 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 SMARCA5O60264 1052 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 HMGB2P26583 209 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 SLC52A2Q9HAB3 445 aa13.69□□□□□ -0.22
CLSTN3-201ENST00000266546 KRT24Q2M2I5 525 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 EIF4A1P60842 406 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 GPS2Q13227 327 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 FBXW7Q969H0 707 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 ABCC4O15439 1325 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 MYL6BP14649 208 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 PHKG2P15735 406 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 CCDC183Q5T5S1 534 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 ANKRD44Q8N8A2 993 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 MNS1Q8NEH6 495 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 GDPD2Q9HCC8 539 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 BTG4Q9NY30 223 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 ZBTB7BO15156 539 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 RAB11FIP3O75154 756 aa13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 RBM25P49756 843 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-201ENST00000266546 KRT85P78386 507 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 ZNF790Q6PG37 636 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 CLASRPQ8N2M8 674 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 NFATC2IPQ8NCF5 419 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 PRIMPOLQ96LW4 560 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 TNMDQ9H2S6 317 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 CHPF2Q9P2E5 772 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 SHPRHQ149N8 1683 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 ERVV-2B6SEH9 535 aa13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 DDX21Q9NR30 783 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLSTN3-201ENST00000266546 FSD2A1L4K1 749 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 KSR2Q6VAB6 950 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 NGLY1Q96IV0 654 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 CHMP4CQ96CF2 233 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 IL1RAPL2Q9NP60 686 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 PI4KAP2A4QPH2 592 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 PSMA5P28066 241 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 PI4KAP1Q8N8J0 262 aa13.66□□□□□ -0.22
CLSTN3-201ENST00000266546 PPP4R3BQ5MIZ7 849 aa13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 CCDC34Q96HJ3 373 aa13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 SOS2Q07890 1332 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 ADCY5O95622 1261 aa13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 TTC22Q5TAA0 569 aa13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 SDF4Q9BRK5 362 aa13.65□□□□□ -0.22
CLSTN3-201ENST00000266546 NUP62CLQ9H1M0 184 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 CYP46A1Q9Y6A2 500 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 SRGAP3O43295 1099 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 LARP1BQ659C4 914 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 NAT10Q9H0A0 1025 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 ANTXR1Q9H6X2 564 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 NOL7Q9UMY1 257 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 210.8 ms