RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 STRN4Q9NRL3 753 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 RFC1P35251 1148 aaPredicted RBP15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 LACTBP83111 547 aaPredicted RBP15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 STAC3Q96MF2 364 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 NUF2Q9BZD4 464 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 STX1AQ16623 288 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 RSPH3Q86UC2 560 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 RABGAP1Q9Y3P9 1069 aa15.96■□□□□ 0.15
CCDC88A-201ENST00000263630 ZNF853P0CG23 659 aa15.96■□□□□ 0.14
CCDC88A-201ENST00000263630 CCDC40Q4G0X9 1142 aa15.96■□□□□ 0.14
CCDC88A-201ENST00000263630 AACSQ86V21 672 aa15.96■□□□□ 0.14
CCDC88A-201ENST00000263630 CCT6BQ92526 530 aa15.96■□□□□ 0.14
CCDC88A-201ENST00000263630 WDR70Q9NW82 654 aa15.96■□□□□ 0.14
CCDC88A-201ENST00000263630 TTC31Q49AM3 519 aaPredicted RBP15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 CCDC82Q8N4S0 544 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 KRT222Q8N1A0 295 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 PDE3AQ14432 1141 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 NBPF1Q3BBV0 1214 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 SUDS3Q9H7L9 328 aaPredicted RBP15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 CEP57Q86XR8 500 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 CACYBPQ9HB71 228 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 IQCA1Q86XH1 822 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 VIMP08670 466 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 C8orf76Q96K31 380 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 VCXQ9H320 206 aa15.95■□□□□ 0.14
CCDC88A-201ENST00000263630 TCERG1LQ5VWI1 586 aa15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 SH2B1Q9NRF2 756 aaPredicted RBP15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 C16orf45Q96MC5 204 aaPredicted RBP15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 IFT74Q96LB3 600 aa15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 MAP7Q14244 749 aa15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 GSTA5Q7RTV2 222 aa15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 CTAGE1Q96RT6 745 aa15.94■□□□□ 0.14
CCDC88A-201ENST00000263630 CEP126Q9P2H0 1117 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 A0A1B0GUA9 196 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 POLR3DP05423 398 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 MVPQ14764 893 aaKnown RBP15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 SIL1Q9H173 461 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 PIP4K2BP78356 416 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 TATP17735 454 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 ARID4AP29374 1257 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 CABP4P57796 275 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 CWC27Q6UX04 472 aaKnown RBP15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 VPS52Q8N1B4 723 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 ATP5DP30049 168 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 EBAG9O00559 213 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 PRR16Q569H4 304 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 PRIMPOLQ96LW4 560 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 TRERF1Q96PN7 1200 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 TACC3Q9Y6A5 838 aa15.93■□□□□ 0.14
CCDC88A-201ENST00000263630 LMBR1Q8WVP7 490 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 AFAP1L2Q8N4X5 818 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 RMND1Q9NWS8 449 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 USP25Q9UHP3 1055 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 ATP2C2O75185 946 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 GBP1P32455 592 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 SSRP1Q08945 709 aaKnown RBP15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 CAVIN4Q5BKX8 364 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 HDGFL1Q5TGJ6 251 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 GABPB2Q8TAK5 448 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 ATRIPQ8WXE1 791 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 SAMD15Q9P1V8 674 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 CCDC194A0A1B0GVG4 234 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 GBP6Q6ZN66 633 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 PFDN4Q9NQP4 134 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 BRD4O60885 1362 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 CRCPO75575 148 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 PDZRN3Q9UPQ7 1066 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 ZNF652Q9Y2D9 606 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 TWISTNBQ3B726 338 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 SH3BGRP55822 239 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 MSANTD4Q8NCY6 345 aa15.92■□□□□ 0.14
CCDC88A-201ENST00000263630 MCM4P33991 863 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 CYLC1P35663 651 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 LMNTD2Q8IXW0 634 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 RNF168Q8IYW5 571 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 RNF41Q9H4P4 317 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 TTC16Q8NEE8 873 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 SPAG5Q96R06 1193 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 BICD1Q96G01 975 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 CATIPQ7Z7H3 387 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 SEPT14Q6ZU15 432 aa15.91■□□□□ 0.14
CCDC88A-201ENST00000263630 WHAMMQ8TF30 809 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 MICALL1Q8N3F8 863 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 CCDC89Q8N998 374 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 SLC12A7Q9Y666 1083 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 ZNF444Q8N0Y2 327 aaPredicted RBP15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 CTAGE9A4FU28 777 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 FMNL3Q8IVF7 1028 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 NAPBQ9H115 298 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 CPLX4Q7Z7G2 160 aa15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 DDX19AQ9NUU7 478 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.9■□□□□ 0.14
CCDC88A-201ENST00000263630 ATF7IPQ6VMQ6 1270 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 ZNF710Q8N1W2 664 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 ABTB2Q8N961 1025 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 SPG7Q9UQ90 795 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 CHD1LQ86WJ1 897 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 RSPH14Q9UHP6 348 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 TMC6Q7Z403 805 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms