RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 MYOCOSA0A1B0GUC4 107 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 H0YIV9 168 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 OR10H2O60403 315 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 SLC35E2BP0CK96 405 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 SLC35E2P0CK97 266 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 TIMP3P35625 211 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 PIGAP37287 484 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 PIK3CGP48736 1102 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 TMED10P49755 219 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 ID2Q02363 134 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 NTRK2Q16620 822 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 FBXO48Q5FWF7 155 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 C10orf62Q5T681 223 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 LYPD8Q6UX82 237 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 CTAGE3PQ8IX95 158 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 HUS1BQ8NHY5 278 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 ATOH8Q96SQ7 321 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 OR51B5Q9H339 312 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 DDX31Q9H8H2 851 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 ACOT9Q9Y305 439 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 TNPO3Q9Y5L0 923 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 ACANP16112 2415 aa16.4■□□□□ 0.22
SHKBP1-227ENST00000602011 SUPT3HB4E1H0 165 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 SUPT3HO75486 399 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 GOSR1O95249 250 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 EPPINO95925 133 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 CELA3AP09093 270 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 CD99P14209 185 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 HOXB4P17483 251 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 STX2P32856 288 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 ADH7P40394 386 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 IST1P53990 364 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 FAM83EQ2M2I3 478 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 FBXL19-AS1Q494R0 122 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 ADGRD1Q6QNK2 874 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 CAPN12Q6ZSI9 719 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 LIX1LQ8IVB5 337 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 OR4N5Q8IXE1 308 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 ULK2Q8IYT8 1036 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 FAM222BQ8WU58 562 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 PPWD1Q96BP3 646 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 DOHHQ9BU89 302 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 TMUB1Q9BVT8 246 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 POLDIP3Q9BY77 421 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 SEMA4BQ9NPR2 832 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 DMRT3Q9NQL9 472 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 SNX15Q9NRS6 342 aa16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 MTRF1LQ9UGC7 380 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 CHCHD2Q9Y6H1 151 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-227ENST00000602011 ABCA4P78363 2273 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 FOXE1O00358 373 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 PLPP1O14494 284 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 DLX5P56178 289 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 NRG3P56975 720 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 SLC37A1P57057 533 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 ZNF267Q14586 743 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 HLA-DQA1Q5Y7H0 255 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 MRM1Q6IN84 353 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 CYP20A1Q6UW02 462 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 WDR53Q7Z5U6 358 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 CAMKMTQ7Z624 323 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 LACC1Q8IV20 430 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 TEX9Q8N6V9 391 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 FAM13CQ8NE31 585 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 C17orf47Q8NEP4 570 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 GOT1L1Q8NHS2 421 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 RNASE6Q93091 150 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 ZNF597Q96LX8 424 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 CNPPD1Q9BV87 410 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 WWTR1Q9GZV5 400 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 ACTR8Q9H981 624 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 RASSF1Q9NS23 344 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 ASB4Q9Y574 426 aa16.38■□□□□ 0.21
SHKBP1-227ENST00000602011 A0A087X1B8 175 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 C2orf92A0A1B0GVN3 265 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 SAP18O00422 153 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 TRIM3O75382 744 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 PIAS1O75925 651 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 IL2RAP01589 272 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 FAM58BPP0C7Q3 252 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 CEACAM8P31997 349 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 ASCL1P50553 236 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 ALDH18A1P54886 795 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 HERVK_113P63132 956 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 ERVK-8P63133 956 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 SNTB1Q13884 538 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 DAZAP2Q15038 168 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 ACAP2Q15057 778 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 EBPQ15125 230 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 C18orf63Q68DL7 685 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 PACS2Q86VP3 889 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 KIF18BQ86Y91 864 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 PPM1NQ8N819 430 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 OR10G3Q8NGC4 313 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 EXT2Q93063 718 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 ERVK-6Q9BXR3 956 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 LIME1Q9H400 295 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 GRPEL1Q9HAV7 217 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 PROK2Q9HC23 129 aa16.37■□□□□ 0.21
SHKBP1-227ENST00000602011 AHSPQ9NZD4 102 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms