RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ELF5Q9UKW6 265 aaPredicted RBP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PPIEQ9UNP9 301 aaKnown RBP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 NTNG1Q9Y2I2 539 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 NAALAD2Q9Y3Q0 740 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 RPS6KL1Q9Y6S9 549 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 FAM169AQ9Y6X4 670 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 ABCB11O95342 1321 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PLIN4Q96Q06 1357 aa2.6□□□□□ -1.99
SCFD1-219ENST00000556413 PRRC2BQ5JSZ5 2229 aaKnown RBP2.6□□□□□ -1.99
SCFD1-219ENST00000556413 C5orf42Q9H799 3197 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 DDX39AO00148 427 aaKnown RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 HMMRO75330 724 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 CABYRO75952 493 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 GJB5O95377 273 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 GGPS1O95749 300 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 RENP00797 406 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 GH1P01241 217 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 SMIM10L2AP0DMW4 78 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 SMIM10L2BP0DMW5 78 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 NR2F1P10589 423 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 IRF2P14316 349 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 EDNRAP25101 427 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 CA8P35219 290 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 LIG4P49917 911 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 CCR3P51677 355 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 NDST2P52849 883 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 DCDC1P59894 354 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 POLR2LP62875 67 aaKnown RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 TRAP1Q12931 704 aaKnown RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 RUNX3Q13761 415 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 VEZF1Q14119 521 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 BECN1Q14457 450 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 UBE2SQ16763 222 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 Q1RN00 199 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 VWC2Q2TAL6 325 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 HSDL1Q3SXM5 330 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 SBK1Q52WX2 424 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 ZSCAN25Q6NSZ9 544 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 IL17RELQ6ZVW7 336 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 ENOSF1Q7L5Y1 443 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 PLPPR4Q7Z2D5 763 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 TC2NQ8N9U0 490 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 VN1R2Q8NFZ6 395 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 OR4D10Q8NGI6 311 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 SPPL2AQ8TCT8 520 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 AFAP1L1Q8TED9 768 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 CHURC1Q8WUH1 139 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 PIK3R3Q92569 461 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 FAM71F1Q96KD3 344 aaPredicted RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 RPGRIP1Q96KN7 1286 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 SEPHS2Q99611 448 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 APOL6Q9BWW8 343 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 OCR1Q9BZK8 76 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 NOL11Q9H8H0 719 aaKnown RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 NLGN3Q9NZ94 848 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 CPSF2Q9P2I0 782 aaKnown RBP2.59□□□□□ -1.99
SCFD1-219ENST00000556413 ABCD2Q9UBJ2 740 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 DDX19BQ9UMR2 479 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 TRPV2Q9Y5S1 764 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 PTPRSQ13332 1948 aa2.59□□□□□ -1.99
SCFD1-219ENST00000556413 MYO15AQ9UKN7 3530 aa2.59□□□□□ -2
SCFD1-219ENST00000556413 USP34Q70CQ2 3546 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 FAM168BA1KXE4 195 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 RSPH10B2B2RC85 870 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 C2CD4DB7Z1M9 353 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 H0Y9J4 135 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 CCER2I3L3R5 266 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 M0R296 226 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 CCL24O00175 119 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 MBTPS2O43462 519 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 TADA2AO75478 443 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 PLEKHA8P1O95397 391 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ACSL3O95573 720 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 CXCL10P02778 98 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 LGALS2P05162 132 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ADRB2P07550 413 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ABCB1P08183 1280 aaPredicted RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 SUPT20HL2P0C7V6 817 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 RSPH10BP0C881 870 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 TOP1P11387 765 aaKnown RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 MGMTP16455 207 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 CD22P20273 847 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 MX1P20591 662 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 AZGP1P25311 298 aaKnown RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 CD52P31358 61 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 LHX1P48742 406 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ERVK-16P61578 105 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 SNTB1Q13884 538 aaKnown RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 KIAA0141Q14154 515 aaPredicted RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 LETM2Q2VYF4 491 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 PLPP4Q5VZY2 271 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 OR4A47Q6IF82 309 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ASCL5Q7RTU5 278 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 AVL9Q8NBF6 648 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 TET1Q8NFU7 2136 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 ATP6V0A1Q93050 837 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 SECISBP2LQ93073 1101 aaKnown RBP2.58□□□□□ -2
SCFD1-219ENST00000556413 LRRC2Q9BYS8 371 aa2.58□□□□□ -2
SCFD1-219ENST00000556413 SLC2A11Q9BYW1 496 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms