RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 TRILQ7L0X0 811 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 VN1R5Q7Z5H4 357 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 CLNKQ7Z7G1 428 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 ANKMY2Q8IV38 441 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 KLHL7Q8IXQ5 586 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PDPRQ8NCN5 879 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 OR10Q1Q8NGQ4 319 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PYROXD1Q8WU10 500 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 TANKQ92844 425 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 RBM18Q96H35 190 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 PWWP2AQ96N64 755 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 CPNE1Q99829 537 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 CENPKQ9BS16 269 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 TTYH2Q9BSA4 534 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 OR8D2Q9GZM6 311 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 NPDC1Q9NQX5 325 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 QPCTLQ9NXS2 382 aa16.5■□□□□ 0.23
SHKBP1-227ENST00000602011 NCF1BA6NI72 391 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 NCF1CA8MVU1 366 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 EFCAB8A8MWE9 144 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 EIF3HO15372 352 aaKnown RBP eCLIP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 KLK8O60259 260 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 WISP3O95389 354 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 GSTA2P09210 222 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 NCF1P14598 390 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 HIST1H1TP22492 207 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 ATP5A1P25705 553 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 CERS1P27544 350 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 TLX1P31314 330 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 MAN2A2P49641 1150 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SLC25A35Q3KQZ1 300 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SLC22A10Q63ZE4 541 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 LRRC70Q7Z2Q7 622 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 INTS1Q8N201 2190 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 TMEM251Q8N6I4 163 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 ACOT4Q8N9L9 421 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SNX31Q8N9S9 440 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 STAG3L4Q8TBR4 150 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SLC22A8Q8TCC7 542 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SLC2A12Q8TD20 617 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 CMTM7Q96FZ5 175 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 SCYL1Q96KG9 808 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 CAPZA3Q96KX2 299 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 F2RL3Q96RI0 385 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 PELOQ9BRX2 385 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 UCK2Q9BZX2 261 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 PHACTR1Q9C0D0 580 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 LDAHQ9H6V9 325 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 CD274Q9NZQ7 290 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 B4GALT7Q9UBV7 327 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 ACAD8Q9UKU7 415 aa16.49■□□□□ 0.23
SHKBP1-227ENST00000602011 DNAJC13O75165 2243 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CCDC189A1A4V9 331 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 FAM221AA4D161 298 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 NKX2-6A6NCS4 301 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 FAM90A27PA6NNH2 459 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 FAM166BA8MTA8 275 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CD1DP15813 335 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 HSPA7P48741 367 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 NR0B1P51843 470 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 IGLV3-21P80748 117 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CHIT1Q13231 466 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 ZNF750Q32MQ0 723 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 C18orf21Q32NC0 220 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 KRTAP21-3Q3LHN1 58 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 MED27Q6P2C8 311 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 ZNF585AQ6P3V2 769 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 C16orf47Q6ZP98 133 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CREG2Q8IUH2 290 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CCDC71Q8IV32 467 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 LAS2Q8IYD9 372 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 ZBED8Q8IZ13 594 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 ZNF473Q8WTR7 871 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 NRGNQ92686 78 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 LRRC46Q96FV0 321 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 POM121Q96HA1 1249 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 SENP5Q96HI0 755 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 UBXN10Q96LJ8 280 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CSF3RQ99062 836 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 KRT12Q99456 494 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 GPR22Q99680 433 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 TMEM79Q9BSE2 394 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 MS4A8Q9BY19 250 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CD244Q9BZW8 370 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 LIN28AQ9H9Z2 209 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 PNPLA3Q9NST1 481 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 CNIH4Q9P003 139 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 MTO1Q9Y2Z2 717 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 SAR1BQ9Y6B6 198 aa16.48■□□□□ 0.23
SHKBP1-227ENST00000602011 ZNF407Q9C0G0 2248 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 PINLYPA6NC86 204 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 ZWINTO95229 277 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 GLI4P10075 376 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 CPN2P22792 545 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 SPRP35270 261 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 GP5P40197 560 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 MSH2P43246 934 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 STT3AP46977 705 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 FOXO1Q12778 655 aa16.47■□□□□ 0.23
SHKBP1-227ENST00000602011 SF3B4Q15427 424 aaKnown RBP eCLIP16.47■□□□□ 0.231e-6■■■■■ 60
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms