RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 WASH6PQ9NQA3 447 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 FAIMQ9NVQ4 179 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 SPATA7Q9P0W8 599 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 PSORS1C1Q9UIG5 152 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 MOSPD1Q9UJG1 213 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 STON1Q9Y6Q2 735 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 ENPP4Q9Y6X5 453 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 PMF1-BGLAPU3KQ54 211 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 PRKRAO75569 313 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 GASTP01350 101 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 RPN2P04844 631 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 IFNW1P05000 195 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 TGFBR2P37173 567 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 TP53BP2Q13625 1128 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 ARHGAP19Q14CB8 494 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 HEPACAMQ14CZ8 416 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 IRF4Q15306 451 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 TCEA2Q15560 299 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 CST6Q15828 149 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 OLIG3Q7RTU3 272 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 C6orf120Q7Z4R8 191 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 UBE3DQ7Z6J8 389 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 DNAJC22Q8N4W6 341 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 OTUB1Q96FW1 271 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 PDXPQ96GD0 296 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 NECTIN3Q9NQS3 549 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 GLOD5A6NK44 160 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 FFAR1O14842 300 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 KMOO15229 486 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 NDUFS4O43181 175 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 CCNB2O95067 398 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 STSP08842 583 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 HOXB3P14651 431 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 EN2P19622 333 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 CXCR2P25025 360 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 POU1F1P28069 291 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 SEC13P55735 322 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 REEP5Q00765 189 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 ELOAQ14241 798 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 SAXO2Q658L1 398 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 DCDC5Q6ZRR9 648 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 PAGE2Q7Z2X7 111 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 HMGN2P46Q86SG4 172 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 CENPSQ8N2Z9 138 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 OR5P2Q8WZ92 322 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 NEURL3Q96EH8 262 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 ALPK1Q96QP1 1244 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 C17orf62Q9BQA9 187 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 WFDC6Q9BQY6 131 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 IGKV1-8A0A0C4DH67 115 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 OR52A4PA6NMU1 304 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 SEMA3DO95025 777 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 POU2F2P09086 479 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 LIMS1P48059 325 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 LEXMQ3ZCV2 418 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF605Q86T29 641 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 ADCK1Q86TW2 530 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 RBM45Q8IUH3 476 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 TAGAPQ8N103 731 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 VANGL1Q8TAA9 524 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 LGALS12Q96DT0 336 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 SIRT3Q9NTG7 399 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 IMPAD1Q9NX62 359 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 ZFR2Q9UPR6 939 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 HCN4Q9Y3Q4 1203 aa17.44■□□□□ 0.38
SHKBP1-201ENST00000291842 DENND4AQ7Z401 1863 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 COL4A3Q01955 1670 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 TRBV4-1A0A0J9YWV2 114 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 CLCA1A8K7I4 914 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 CTSKP43235 329 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 SOX9P48436 509 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 CSNK1G2P78368 415 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 PTGES3Q15185 160 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 C2orf27AQ580R0 203 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 NUDT13Q86X67 352 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 GPR32P1Q8NGA4 272 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 TEFMQ96QE5 360 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 KXD1Q9BQD3 176 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 TEX101Q9BY14 249 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 NMNAT1Q9HAN9 279 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 DUSP12Q9UNI6 340 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 ALPK3Q96L96 1907 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 CLDN25C9JDP6 229 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 HMGN4O00479 90 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 SEMA7AO75326 666 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 HNRNPCP07910 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 OCM2P0CE71 109 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 OCMP0CE72 109 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 RHCEP18577 417 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 PCBP4P57723 403 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 KLHL17Q6TDP4 642 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 OR5D16Q8NGK9 328 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 DYNC2LI1Q8TCX1 351 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 GANCQ8TET4 914 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 RGMAQ96B86 450 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 ITPAQ9BY32 194 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 AICDAQ9GZX7 198 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 SLC6A17Q9H1V8 727 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 KLHL31Q9H511 634 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 SFXN1Q9H9B4 322 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms