RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RXRGP48443 463 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 PCBP3P57721 371 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 RPA4Q13156 261 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 ITGADQ13349 1161 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 PDGFRLQ15198 375 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 TMEM236Q5W0B7 351 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 VITQ6UXI7 678 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 IKBIPQ70UQ0 350 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 SVOPQ8N4V2 548 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 LINC01555Q8NAE3 123 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 PHOSPHO2Q8TCD6 241 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 GEMIN6Q8WXD5 167 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 MENTQ9BUN1 341 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 EPS8L2Q9H6S3 715 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 LHX9Q9NQ69 397 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 FAM32AQ9Y421 112 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 PCDHGA2Q9Y5H1 932 aa17.48■□□□□ 0.39
SHKBP1-201ENST00000291842 A0A1W2PPV9 198 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 TMPRSS11DO60235 418 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 LCMT2O60294 686 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 KAT7O95251 611 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 RECKO95980 971 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 SLC35G4P0C7Q5 338 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 IDUAP35475 653 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 CCR8P51685 355 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 TMCO5AQ8N6Q1 288 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 FERD3LQ96RJ6 166 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 PIP5K1AQ99755 562 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 MACROD1Q9BQ69 325 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 CCNB1IP1Q9NPC3 277 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 WBP1LQ9NX94 342 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 TEX10Q9NXF1 929 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 THAP10Q9P2Z0 257 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 AP1M2Q9Y6Q5 423 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 GADD45GO95257 159 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 ANXA8P13928 327 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 ITGA2P17301 1181 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 FCARP24071 287 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 PTGER1P34995 402 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 XCR1P46094 333 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 AGBL4Q5VU57 503 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 SZRD1Q7Z422 152 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 C7orf61Q8IZ16 206 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 SLC38A5Q8WUX1 472 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 TRUB1Q8WWH5 349 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 SH3YL1Q96HL8 342 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 RSPO3Q9BXY4 272 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 RHBGQ9H310 441 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 THSD1Q9NS62 852 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 PLEKHM1Q9Y4G2 1056 aa17.47■□□□□ 0.39
SHKBP1-201ENST00000291842 A0A1W2PP55 124 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 OR2A25A4D2G3 310 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 PDPK1O15530 556 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 B4GALT2O60909 372 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 ERGP11308 486 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 CD36P16671 472 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 PUM1Q14671 1186 aaKnown RBP eCLIP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 SPDYE7PQ495Y7 208 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 REEP3Q6NUK4 255 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 IGFN1Q86VF2 1251 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 PHF10Q8WUB8 498 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 IPCEF1Q8WWN9 437 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 RAB7BQ96AH8 199 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 C12orf66Q96MD2 445 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 PLA2G2FQ9BZM2 168 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 IGFLR1Q9H665 355 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 GPR83Q9NYM4 423 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 ZNF226Q9NYT6 803 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 ICKQ9UPZ9 632 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 KCNK6Q9Y257 313 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 POFUT2Q9Y2G5 429 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 KIF26AQ9ULI4 1882 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 CAPN5O15484 640 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 NADKO95544 446 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 IFNA14P01570 189 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 RUNX3Q13761 415 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 SNX29P2Q8IUI4 249 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 ARMC8Q8IUR7 673 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 SMPDL3AQ92484 453 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 GGHQ92820 318 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 SIGLEC11Q96RL6 698 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 TMEM106CQ9BVX2 250 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 IMP3Q9NV31 184 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 TSC22D4Q9Y3Q8 395 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 HEATR5BQ9P2D3 2071 aa17.46■□□□□ 0.39
SHKBP1-201ENST00000291842 C5orf58C9J3I9 102 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 SLC22A1O15245 554 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 LIPAP38571 399 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 LIM2P55344 173 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 FGL2Q14314 439 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 MLF2Q15773 248 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 FAM46CQ5VWP2 391 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 HDDC3Q8N4P3 179 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 AQP11Q8NBQ7 271 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 RHOXF1Q8NHV9 184 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 TMEM19Q96HH6 336 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 INSM2Q96T92 566 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 WDR26Q9H7D7 661 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF556Q9HAH1 456 aa17.45■□□□□ 0.38
SHKBP1-201ENST00000291842 PELI2Q9HAT8 420 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms