RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 DNAL1Q4LDG9 190 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 DEFB134Q4QY38 66 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 CPTPQ5TA50 214 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 OR4F3Q6IEY1 312 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 SLC2A7Q6PXP3 512 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 DSELQ8IZU8 1212 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 FAM47BQ8NA70 645 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 GTF2H4Q92759 462 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 KLHL29Q96CT2 875 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 MAPKAP1Q9BPZ7 522 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 GPATCH1Q9BRR8 931 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 NPLQ9BXD5 320 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 CADM1Q9BY67 442 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 BHLHE41Q9C0J9 482 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 SYNDIG1Q9H7V2 258 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 LYRM4Q9HD34 91 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 SERHLQ9NQF3 203 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 FAM120CQ9NX05 1096 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 TAS2R7Q9NYW3 318 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 ATG4BQ9Y4P1 393 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 PCDHA9Q9Y5H5 950 aa13.96□□□□□ -0.17
SHKBP1-211ENST00000595945 PTPRZ1P23471 2315 aaPredicted RBP13.96□□□□□ -0.18
SHKBP1-211ENST00000595945 NUP210LQ5VU65 1888 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 GYG2O15488 501 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 GSC2O15499 205 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PROM1O43490 865 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 GDF9O60383 454 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 DNAJB6O75190 326 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 GUCY1B2O75343 617 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 SLC34A2O95436 690 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 NPPAP01160 153 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 KRT16P08779 473 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 HOXB9P17482 250 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 LIM2P55344 173 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 ITGA1P56199 1179 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 MXRA7P84157 204 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 ACY1Q03154 408 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 DMTNQ08495 405 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 SPIDRQ14159 915 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 HEPACAMQ14CZ8 416 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 MPEG1Q2M385 716 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PGS1Q32NB8 556 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 TRMT5Q32P41 509 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 STPG1Q5TH74 334 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 ANKRD26P1Q6NSI1 321 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 NIPAL1Q6NVV3 410 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 TLDC1Q6P9B6 456 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 C16orf89Q6UX73 402 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 DLEU7Q6UYE1 221 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 GPR180Q86V85 440 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 TICAM1Q8IUC6 712 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PGAM4Q8N0Y7 254 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 KIF2BQ8N4N8 673 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 TTC29Q8NA56 475 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PCYOX1LQ8NBM8 494 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 UCN3Q969E3 161 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PPCDCQ96CD2 204 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 OR52E6Q96RD3 313 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PRPF18Q99633 342 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 DUSP26Q9BV47 211 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 FAIM2Q9BWQ8 316 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 CLK4Q9HAZ1 481 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PRDM9Q9NQV7 894 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 FGF21Q9NSA1 209 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 NDE1Q9NXR1 346 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 EHD3Q9NZN3 535 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 PHF11Q9UIL8 331 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 CES1P1Q9UKY3 287 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 DAPP1Q9UN19 280 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 NAALAD2Q9Y3Q0 740 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 NEUROG3Q9Y4Z2 214 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 CCDC88CQ9P219 2028 aa13.95□□□□□ -0.18
SHKBP1-211ENST00000595945 TRBV5-3A0A0A0MS03 114 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 ANKRD65E5RJM6 399 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 OR2B3O76000 313 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 NSA2O95478 260 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 AIFM1O95831 613 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 PTPN6P29350 595 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 TNFRSF17Q02223 184 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 FOXM1Q08050 763 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 ART3Q13508 389 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 MAPKAPK3Q16644 382 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 MUM1Q2TAK8 710 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 LRIF1Q5T3J3 769 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 NDUFAF5Q5TEU4 345 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 YOD1Q5VVQ6 348 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 B3GNT8Q7Z7M8 397 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 CA13Q8N1Q1 262 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 RCBTB1Q8NDN9 531 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 N4BP2L2Q92802 583 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 UTP4Q969X6 686 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 CCDC115Q96NT0 180 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 PAIP1Q9H074 479 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 WDR41Q9HAD4 459 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 ANKHQ9HCJ1 492 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 CUTCQ9NTM9 273 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 ATAD3AQ9NVI7 634 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 GID8Q9NWU2 228 aa13.94□□□□□ -0.18
SHKBP1-211ENST00000595945 SLAMF8Q9P0V8 285 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 334.3 ms