RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TIA1P31483 386 aaKnown RBP eCLIP14.13□□□□□ -0.15
NUP54-213ENST00000513352 HK2P52789 917 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 SRSF6Q13247 344 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 ERV3-1Q14264 604 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 NKG7Q16617 165 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 XKR7Q5GH72 579 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 FAM69BQ5VUD6 431 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 NXNQ6DKJ4 435 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ZNF517Q6ZMY9 492 aaPredicted RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 Q6ZSR9 355 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 GPR180Q86V85 440 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ZC3H7AQ8IWR0 971 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 SHISA5Q8N114 240 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ZCCHC7Q8N3Z6 543 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 FNDC5Q8NAU1 212 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ADAMTS18Q8TE60 1221 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 TBC1D20Q96BZ9 403 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 EFHD1Q9BUP0 239 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ACTL8Q9H568 366 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 CLK4Q9HAZ1 481 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 LYRM4Q9HD34 91 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 IL17BQ9UHF5 180 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ADAM29Q9UKF5 820 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 NXT1Q9UKK6 140 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 DAPP1Q9UN19 280 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 MRPS33Q9Y291 106 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 RAXQ9Y2V3 346 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 CCL27Q9Y4X3 112 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 USH1CQ9Y6N9 552 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 NUP210LQ5VU65 1888 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 GOLGA8QA0A0J9YX86 632 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 GOLGA8OA6NCC3 632 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 GOLGA8NF8WBI6 632 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 DIAPH2O60879 1101 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 CNOT3O75175 753 aaKnown RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 ONECUT2O95948 504 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 HEXBP07686 556 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 FHP07954 510 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 ANXA4P09525 319 aaPredicted RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 JAK1P23458 1154 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 F8A1P23610 371 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 PTPN4P29074 926 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 TPP2P29144 1249 aaPredicted RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 TLX1P31314 330 aaPredicted RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 BUD31P41223 144 aaPredicted RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 HNRNPH2P55795 449 aaKnown RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 VWA5B1Q5TIE3 1220 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 FAAH2Q6GMR7 532 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 MRPL14Q6P1L8 145 aaKnown RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 LRRC69Q6ZNQ3 347 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 OR1F2PQ96R84 312 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 CSF3RQ99062 836 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 CRB3Q9BUF7 120 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 C1orf50Q9BV19 199 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 GPR87Q9BY21 358 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 DPH1Q9BZG8 443 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 SLC26A1Q9H2B4 701 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 WDR55Q9H6Y2 383 aaPredicted RBP14.12□□□□□ -0.15
NUP54-213ENST00000513352 WDR54Q9H977 334 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 WDR41Q9HAD4 459 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 MEAF6Q9HAF1 191 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 NPHS2Q9NP85 383 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 FGFR1OP2Q9NVK5 253 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 MCM8Q9UJA3 840 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 MKL2Q9ULH7 1088 aa14.12□□□□□ -0.15
NUP54-213ENST00000513352 TMEM8BA6NDV4 472 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 SDHDO14521 159 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 GUCY1B2O75343 617 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 VPS4BO75351 444 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 BMP10O95393 424 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 TROVE2P10155 538 aaKnown RBP eCLIP14.11□□□□□ -0.15
NUP54-213ENST00000513352 NR2F6P10588 404 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 IL10P22301 178 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 PRPH2P23942 346 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 MAPK1P28482 360 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 EPHA3P29320 983 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 OTX2P32243 289 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 ALDH9A1P49189 494 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 GNGT1P63211 74 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 RAE1P78406 368 aaKnown RBP14.11□□□□□ -0.15
NUP54-213ENST00000513352 FOXK2Q01167 660 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 TNFRSF17Q02223 184 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 KLC1Q07866 573 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 SF3A3Q12874 501 aaKnown RBP eCLIP14.11□□□□□ -0.15
NUP54-213ENST00000513352 BROXQ5VW32 411 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 C18orf63Q68DL7 685 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 NOXRED1Q6NXP6 359 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 RIPOR1Q6ZS17 1223 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 ACAD11Q709F0 780 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 SPACA3Q8IXA5 215 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 CCNL2Q96S94 520 aaPredicted RBP14.11□□□□□ -0.15
NUP54-213ENST00000513352 CCDC134Q9H6E4 229 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 AKTIPQ9H8T0 292 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 TEX10Q9NXF1 929 aaPredicted RBP14.11□□□□□ -0.15
NUP54-213ENST00000513352 MS4A12Q9NXJ0 267 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 C3orf18Q9UK00 162 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 TCFL5Q9UL49 500 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 ATG4BQ9Y4P1 393 aa14.11□□□□□ -0.15
NUP54-213ENST00000513352 URB1O60287 2271 aaKnown RBP14.11□□□□□ -0.15
NUP54-213ENST00000513352 IGLV3-12A0A075B6K2 115 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms