RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 CACNA2D3Q8IZS8 1091 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 ZCCHC7Q8N3Z6 543 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 ZNF655Q8N720 491 aaPredicted RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 FNDC5Q8NAU1 212 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 AGBL5Q8NDL9 886 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 SRFBP1Q8NEF9 429 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 OR8K5Q8NH50 307 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 PRR7Q8TB68 274 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 C16orf78Q8WTQ4 265 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 RERGQ96A58 199 aaPredicted RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 COQ8BQ96D53 544 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 C10orf90Q96M02 699 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 CATSPER2Q96P56 530 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 SERINC2Q96SA4 455 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 C17orf62Q9BQA9 187 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 BRINP2Q9C0B6 783 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 NMUR2Q9GZQ4 415 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 ZFAND3Q9H8U3 227 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 CLK4Q9HAZ1 481 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 APMAPQ9HDC9 416 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 SLC22A11Q9NSA0 550 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 TMEM45AQ9NWC5 275 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 SOHLH2Q9NX45 425 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 TAS2R7Q9NYW3 318 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 MCM8Q9UJA3 840 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 CES1P1Q9UKY3 287 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 EIF3LQ9Y262 564 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 TMED5Q9Y3A6 229 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 ATG4BQ9Y4P1 393 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 COPG1Q9Y678 874 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 MUC6Q6W4X9 2439 aa5.64□□□□□ -1.51
USP39-213ENST00000467885 ZFC3H1O60293 1989 aaKnown RBP5.64□□□□□ -1.51
USP39-213ENST00000467885 A0A0A6YYC8 382 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 DCDC2BA2VCK2 349 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 PMS2P1A4D2B8 440 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 URADA6NGE7 173 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 POM121CA8CG34 1229 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 EFCAB7A8K855 629 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 B4E171 279 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TMEM150CB9EJG8 249 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 I3L1I5 382 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 SGK494L7N484 410 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 PSMD12O00232 456 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 CHST10O43529 356 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TBX19O60806 448 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 SCN2BO60939 215 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 CSO75390 466 aaKnown RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 SLC22A3O75751 556 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 NTRK1P04629 796 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 FAM58BPP0C7Q3 252 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 SLC35G6P0C7Q6 338 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 FTH1P19P0C7X4 201 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 IDO1P14902 403 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 PCSK2P16519 638 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ZNF28P17035 718 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ITGAXP20702 1163 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ALAS2P22557 587 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TIA1P31483 386 aaKnown RBP eCLIP5.63□□□□□ -1.51
USP39-213ENST00000467885 TSPAN7P41732 249 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 MTTPP55157 894 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 LIM2P55344 173 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 HNRNPH2P55795 449 aaKnown RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 ITGA1P56199 1179 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 WNT3P56703 355 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 C21orf58P58505 322 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TAS2R50P59544 299 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TRA2BP62995 288 aaKnown RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 IRX1P78414 480 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 PHEXP78562 749 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 GABPB1Q06547 395 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 FOXM1Q08050 763 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 RGS1Q08116 209 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ACSM2AQ08AH3 577 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 C2orf80Q0P641 193 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 MAD2L1Q13257 205 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 UBAP2LQ14157 1087 aaKnown RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 GRM7Q14831 915 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 PTGR1Q14914 329 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 SLC9A5Q14940 896 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 HERC3Q15034 1050 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 RSPO4Q2I0M5 234 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 MPEG1Q2M385 716 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 DEFB134Q4QY38 66 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 PDCD4Q53EL6 469 aaKnown RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 SPIN4Q56A73 249 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 FAM91A1Q658Y4 838 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ZNF385CQ66K41 422 aaPredicted RBP5.63□□□□□ -1.51
USP39-213ENST00000467885 ACSM2BQ68CK6 577 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 DESI1Q6ICB0 168 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 LCN10Q6JVE6 187 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 RAB11FIP2Q7L804 512 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TMPRSS7Q7RTY8 843 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TRPM8Q7Z2W7 1104 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 GPR180Q86V85 440 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 TMPRSS12Q86WS5 348 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 MMP21Q8N119 569 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 LIX1Q8N485 282 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 KRTCAP2Q8N6L1 136 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 OR9A4Q8NGU2 314 aa5.63□□□□□ -1.51
USP39-213ENST00000467885 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms