RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZNF540Q8NDQ6 660 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 WDR34Q96EX3 536 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 KCNC2Q96PR1 638 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 ITM2CQ9NQX7 267 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 NDUFAF4Q9P032 175 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 NDRG4Q9ULP0 352 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 NAALAD2Q9Y3Q0 740 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF99A8MXY4 864 aaPredicted RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 RTCAO00442 366 aaKnown RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 PFDN1O60925 122 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 SOAT1P35610 550 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 CHI3L1P36222 383 aaPredicted RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 LSM3P62310 102 aaKnown RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 SELENOWP63302 87 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 NPRL3Q12980 569 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 CAMK2GQ13555 558 aaPredicted RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 DGCR6Q14129 220 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC5A12Q1EHB4 618 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 PRAMEF14Q5SWL7 426 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 PRAMEF13Q5VWM6 474 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 KIAA1614Q5VZ46 1190 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF566Q969W8 418 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 APOL4Q9BPW4 351 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 LGR4Q9BXB1 951 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 GPN2Q9H9Y4 310 aaPredicted RBP17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 ATAD3AQ9NVI7 634 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 PCDHGA10Q9Y5H3 936 aa17.58■□□□□ 0.41
SHKBP1-201ENST00000291842 TBC1D3BA6NDS4 549 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 J3QRK9 145 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 PCCBP05166 539 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 ITIH1P19827 911 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 P2RY2P41231 377 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 BMXP51813 675 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 SCARB2Q14108 478 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 MAD2L1BPQ15013 274 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 FAM71E1Q6IPT2 247 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 FAHD1Q6P587 224 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 TMIGD1Q6UXZ0 262 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 ERN2Q76MJ5 926 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 SMYD1Q8NB12 490 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 ZNF784Q8NCA9 323 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 CXorf40AQ8TE69 158 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 SPATA9Q9BWV2 254 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 OR52A5Q9H2C5 316 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 MAPRE3Q9UPY8 281 aa17.58■□□□□ 0.4
SHKBP1-201ENST00000291842 M0QX08 132 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PCDHGA12O60330 932 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 GPR37L1O60883 481 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TNFRSF21O75509 655 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 FADS2O95864 444 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 VIPP01282 170 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 EPHX1P07099 455 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 ALDH4A1P30038 563 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 SLC35A2P78381 396 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 CNTN1Q12860 1018 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TEAD4Q15561 434 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 METTL4Q8N3J2 472 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 MIPOL1Q8TD10 442 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TAMM41Q96BW9 452 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PPP1R16AQ96I34 528 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 RAD21L1Q9H4I0 556 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 RLIMQ9NVW2 624 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 RHBDL2Q9NX52 303 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TAC3Q9UHF0 121 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TPRKBQ9Y3C4 175 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 SNX8Q9Y5X2 465 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PRAMEF25A6NGN4 478 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 J3KTA2 159 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TNFRSF11BO00300 401 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 FAM20BO75063 409 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 MT-ND2P03891 347 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 INHBBP09529 407 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 FUT4P22083 530 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 KRT20P35900 424 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 IL12RB1P42701 662 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 RANBP1P43487 201 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 MASP1P48740 699 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 DPTQ07507 201 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 GCNT6Q5T4J0 391 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 ZNF765Q7L2R6 523 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 HEATR4Q86WZ0 1026 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 GOT1L1Q8NHS2 421 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 FNDC8Q8TC99 324 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TFGQ92734 400 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 RORBQ92753 470 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 CXorf40BQ96DE9 158 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 LINC00615Q96LM1 132 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 FEVQ99581 238 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 SLC6A16Q9GZN6 736 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 TMEM245Q9H330 911 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 DPEP2Q9H4A9 486 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 EHD1Q9H4M9 534 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 SCN3BQ9NY72 215 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PRKAG2Q9UGJ0 569 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 ENPP5Q9UJA9 477 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PADI2Q9Y2J8 665 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PCDHGB3Q9Y5G1 929 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 LYVE1Q9Y5Y7 322 aa17.57■□□□□ 0.4
SHKBP1-201ENST00000291842 PLXND1Q9Y4D7 1925 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms