RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PHACTR1Q9C0D0 580 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 PITHD1Q9GZP4 211 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 MMP25Q9NPA2 562 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 LANCL2Q9NS86 450 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 OLAHQ9NV23 265 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 ABI3Q9P2A4 366 aa17.97■□□□□ 0.47
CCDC28A-203ENST00000617445 OR5H15A6NDH6 313 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 E2F3O00716 465 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 FANCGO15287 622 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 CHST10O43529 356 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 SERPINA6P08185 405 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 GSTM2P28161 218 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 CAV1Q03135 178 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 ZNF33BQ06732 778 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 TSNQ15631 228 aaKnown RBP17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 DEFB134Q4QY38 66 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 TMPRSS11BQ86T26 416 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 CEP97Q8IW35 865 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 UTP15Q8TED0 518 aaKnown RBP17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 ANKRD49Q8WVL7 239 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 MAGEB10Q96LZ2 347 aaPredicted RBP17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 SLC6A16Q9GZN6 736 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 CNOT10Q9H9A5 744 aaKnown RBP17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 SAYSD1Q9NPB0 183 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 UTP11Q9Y3A2 253 aaKnown RBP17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 PCDHGB6Q9Y5F9 930 aa17.96■□□□□ 0.47
CCDC28A-203ENST00000617445 IGHV3-20A0A0C4DH32 117 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 A8MUI8 341 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 PRAMEF2O60811 474 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 CRYABP02511 175 aaKnown RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF888P0CJ79 500 aaPredicted RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 SSTR1P30872 391 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 CASQ1P31415 396 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 HPDP32754 393 aaPredicted RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 PER3P56645 1201 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF460Q14592 562 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 RBBP5Q15291 538 aaKnown RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 MEP1AQ16819 746 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 SFT2D3Q587I9 215 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF324BQ6AW86 544 aaPredicted RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 PAPD4Q6PIY7 484 aaKnown RBP17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 C3orf62Q6ZUJ4 267 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 ANKRD53Q8N9V6 530 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 OR5T3Q8NGG3 340 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 RHBDF1Q96CC6 855 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 DPH5Q9H2P9 285 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 KCNK13Q9HB14 408 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 SMYD2Q9NRG4 433 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 GPRC5BQ9NZH0 403 aa17.95■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF860A6NHJ4 632 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 RAD51CO43502 376 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 RASAL1O95294 804 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 WISP3O95389 354 aaPredicted RBP17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 RNF224P0DH78 156 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 SMIM10L1P0DMW3 83 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 C1GALT1C1LP0DN25 315 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 GGT5P36269 586 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 GP5P40197 560 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 SLC6A12P48065 614 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 OR4D2P58180 307 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 TAS2R50P59544 299 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 ATP6V0D1P61421 351 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 STXBP1P61764 594 aaKnown RBP17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 USP10Q14694 798 aaKnown RBP17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 TGFBIQ15582 683 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 ACER2Q5QJU3 275 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 QSOX2Q6ZRP7 698 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 MAMDC2Q7Z304 686 aaPredicted RBP17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 LGI4Q8N135 537 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 KRT78Q8N1N4 520 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 SLC5A8Q8N695 610 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 NR4A3Q92570 626 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 SMIM10Q96HG1 83 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 GPR22Q99680 433 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 RBBP8Q99708 897 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 RAB17Q9H0T7 212 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 SPNS1Q9H2V7 528 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 NT5DC2Q9H857 520 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 MTO1Q9Y2Z2 717 aaKnown RBP17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 CENPEQ02224 2701 aa17.94■□□□□ 0.46
CCDC28A-203ENST00000617445 A0A1B0GUH1 482 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 TCRBV9S1A1TA0A576 114 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 OR2W5A6NFC9 320 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 FAM159BA6NKW6 160 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 PSMD12O00232 456 aaPredicted RBP17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 PRMT3O60678 531 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 CDC123O75794 336 aaPredicted RBP17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 WDR47O94967 919 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 RNH1P13489 461 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 STMN1P16949 149 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 ETF1P62495 437 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 SULT1C3Q6IMI6 304 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 SLCO4C1Q6ZQN7 724 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 CAPN12Q6ZSI9 719 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 GPSM1Q86YR5 675 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 ARMC2Q8NEN0 867 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 CREB3L4Q8TEY5 395 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 TAAR6Q96RI8 345 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 EHD1Q9H4M9 534 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 GRHL1Q9NZI5 618 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms