RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 AZIN1O14977 448 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PEPDP12955 493 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CDK7P50613 346 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CRISP3P54108 245 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ARF5P84085 180 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ISLR2Q6UXK2 745 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TBC1D21Q8IYX1 336 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PNLDC1Q8NA58 520 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PTERQ96BW5 349 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ROPN1BQ9BZX4 212 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FN3KQ9H479 309 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ROPN1Q9HAT0 212 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SNX15Q9NRS6 342 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PIGVQ9NUD9 493 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ANKRD10Q9NXR5 420 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 GMNCA6NCL1 334 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PRORSD1PA6NEY8 169 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SOBPA7XYQ1 873 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FAM166BA8MTA8 275 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 M0QZQ0 153 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 AP2A1O95782 977 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CLIC3O95833 236 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 HK1P19367 917 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ARSHQ5FYA8 562 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SIRPB2Q5JXA9 342 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 EEF1A1P5Q5VTE0 462 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 OLFML2AQ68BL7 652 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FRRS1Q6ZNA5 592 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PIGXQ8TBF5 258 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TCTN2Q96GX1 697 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 GINS4Q9BRT9 223 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 MENTQ9BUN1 341 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 NTMT1Q9BV86 223 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ENKD1Q9H0I2 346 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TSPAN10Q9H1Z9 355 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 HSFX1Q9UBD0 423 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 KLF13Q9Y2Y9 288 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SHPRHQ149N8 1683 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TMEM189-UBE2V1I3L0A0 370 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TGFB1I1O43294 461 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 BCAS2O75934 225 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SERPINE1P05121 402 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 F3P13726 295 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 XCR1P46094 333 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 USP46P62068 366 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 GBE1Q04446 702 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 KCTD18Q6PI47 426 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF454Q8N9F8 522 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 OR4C6Q8NH72 309 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ADAD1Q96M93 576 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SH3GL2Q99962 352 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CAB39LQ9H9S4 337 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TCF7L2Q9NQB0 619 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TMEM184CQ9NVA4 438 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CCDC167Q9P0B6 97 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 THAP10Q9P2Z0 257 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF223Q9UK11 482 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CORO1CQ9ULV4 474 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ANXA2P2A6NMY6 339 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 HYAL3O43820 417 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 COL6A2P12110 1019 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ATP6V1B1P15313 513 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 RAB14P61106 215 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FRG1Q14331 258 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 INAQ16352 499 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 LCN1P1Q5VSP4 162 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SPNS3Q6ZMD2 512 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CPXM2Q8N436 756 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 DENND6BQ8NEG7 585 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PROKR2Q8NFJ6 384 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 OR1J4Q8NGS1 313 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TFAP2BQ92481 460 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TMEM185BQ9H7F4 350 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A0A6YYC8 382 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 C17orf105B2RV13 164 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 I3L1I5 382 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SUV39H1O43463 412 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 JUNP05412 331 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 HOXB9P17482 250 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 KCNC1P48547 511 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 XKP51811 444 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 RIDAP52758 137 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 OLR1P78380 273 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CDK3Q00526 305 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FAPQ12884 760 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 INO80DQ53TQ3 878 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CDKAL1Q5VV42 579 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 FSTL4Q6MZW2 842 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PNCKQ6P2M8 343 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC22A25Q6T423 547 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 SIRT6Q8N6T7 355 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 CPEB3Q8NE35 698 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 RASSF5Q8WWW0 418 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 DNAJA3Q96EY1 480 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF597Q96LX8 424 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 KCNC2Q96PR1 638 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 TRIB1Q96RU8 372 aa8.87□□□□□ -0.99
LIMCH1-202ENST00000381753 PDCD10Q9BUL8 212 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms