RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PAPLNO95428 1278 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 RRM2P31350 389 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MAPK9P45984 424 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 PNLIPRP1P54315 467 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 GP2P55259 537 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 ITGA1P56199 1179 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MPEG1Q2M385 716 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 NXPE4Q6UWF7 544 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 Q6ZPB1 254 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 LRRC56Q8IYG6 542 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 C16orf78Q8WTQ4 265 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 RAB2BQ8WUD1 216 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MUL1Q969V5 352 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 TBC1D20Q96BZ9 403 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 ZDHHC5Q9C0B5 715 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 ADPRHL2Q9NX46 363 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 DEC1Q9P2X7 70 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 TESMINQ9Y4I5 508 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MAP4K5Q9Y4K4 846 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MVDP53602 400 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 FPGSQ05932 587 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 ELP6Q0PNE2 266 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 IL18R1Q13478 541 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 E2F2Q14209 437 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 HIST2H2ACQ16777 129 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 FAM78AQ5JUQ0 283 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 HIST2H2AA3Q6FI13 130 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 GALNT18Q6P9A2 607 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 C11orf65Q8NCR3 313 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 OR52J3Q8NH60 311 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 FBLIM1Q8WUP2 373 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 FKBP10Q96AY3 582 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 MAGED4Q96JG8 741 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 EFCAB11Q9BUY7 163 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 CCDC177Q9NQR7 707 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 TM7SF3Q9NS93 570 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 TMEM184CQ9NVA4 438 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 GALNT8Q9NY28 637 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF282Q9UDV7 671 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 EDDM13A0A1B0GTR0 161 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 JRKO75564 520 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 BCL10O95999 233 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 FURINP09958 794 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 TFPTP0C1Z6 253 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 CCDC159P0C7I6 412 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 AQP6Q13520 282 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 SPCS2Q15005 226 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 GAB4Q2WGN9 574 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 PAGE2BQ5JRK9 111 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 CCDC81Q6ZN84 652 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 CCDC71Q8IV32 467 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 LAS2Q8IYD9 372 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 SETD9Q8NE22 299 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 PPCDCQ96CD2 204 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 ATP6V1HQ9UI12 483 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 PSME2Q9UL46 239 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 SOBPA7XYQ1 873 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 FOXE1O00358 373 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 ACADLP28330 430 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 PCGF2P35227 344 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 PPIGQ13427 754 aaKnown RBP eCLIP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 ELAVL3Q14576 367 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 NPTX1Q15818 432 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC16A12Q6ZSM3 486 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 TSEN54Q7Z6J9 526 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 C11orf96Q7Z7L8 435 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 ADGRD2Q7Z7M1 963 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 CPA6Q8N4T0 437 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 FBXO15Q8NCQ5 510 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 TMIEQ8NEW7 156 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 NFKBIDQ8NI38 313 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 ABTB1Q969K4 478 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 DOHHQ9BU89 302 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 BHLHE41Q9C0J9 482 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 DYRK4Q9NR20 520 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC23A2Q9UGH3 650 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 CORO2BQ9UQ03 480 aa17.6■□□□□ 0.41
SHKBP1-201ENST00000291842 C9P02748 559 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 PPIBP23284 216 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 VASPP50552 380 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 MLLT10P55197 1068 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 CYP4F2P78329 520 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 RTL10Q7L3V2 364 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 PIWIL3Q7Z3Z3 882 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 RNF130Q86XS8 419 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 OR2L2Q8NH16 312 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 FAM81AQ8TBF8 368 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 FAR1Q8WVX9 515 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 KIAA1549LQ6ZVL6 1849 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 NDUFS2O75306 463 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 BCAS1O75363 584 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 IL3P08700 152 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 CD6P30203 668 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 PRIM2P49643 509 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 RPP38P78345 283 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 KEAP1Q14145 624 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 GPR153Q6NV75 609 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 VN1R5Q7Z5H4 357 aa17.59■□□□□ 0.41
SHKBP1-201ENST00000291842 FAM124AQ86V42 546 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms