RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ABHD17AQ96GS6 310 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 ZCCHC2Q9C0B9 1178 aaKnown RBP9.34□□□□□ -0.91
CD44-239ENST00000639002 CABP1Q9NZU7 370 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 BCRP11274 1271 aa9.33□□□□□ -0.92
CD44-239ENST00000639002 TBCELQ5QJ74 424 aa9.33□□□□□ -0.92
CD44-239ENST00000639002 TPCN2Q8NHX9 752 aa9.33□□□□□ -0.92
CD44-239ENST00000639002 C7orf43Q8WVR3 580 aa9.33□□□□□ -0.92
CD44-239ENST00000639002 ZIC5Q96T25 663 aa9.33□□□□□ -0.92
CD44-239ENST00000639002 A0A1W2PNR3 127 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 TXLNAP40222 546 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 CTBSQ01459 385 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 C1orf229Q6ZS94 237 aaPredicted RBP9.32□□□□□ -0.92
CD44-239ENST00000639002 NLRP8Q86W28 1048 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 OGFOD1Q8N543 542 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 KLRG1Q96E93 195 aa9.32□□□□□ -0.92
CD44-239ENST00000639002 ATXN7L1Q9ULK2 861 aaPredicted RBP9.32□□□□□ -0.92
CD44-239ENST00000639002 MAFBQ9Y5Q3 323 aaPredicted RBP9.32□□□□□ -0.92
CD44-239ENST00000639002 TEAD4Q15561 434 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 SH3PXD2AQ5TCZ1 1133 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 SLC9A9Q8IVB4 645 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 LARGE2Q8N3Y3 721 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 L3MBTL2Q969R5 705 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 ZDHHC3Q9NYG2 299 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 PHF24Q9UPV7 400 aa9.31□□□□□ -0.92
CD44-239ENST00000639002 PALM3A6NDB9 673 aaPredicted RBP9.3□□□□□ -0.92
CD44-239ENST00000639002 NOS2P35228 1153 aa9.3□□□□□ -0.92
CD44-239ENST00000639002 ATP1A2P50993 1020 aa9.3□□□□□ -0.92
CD44-239ENST00000639002 MAP3K10Q02779 954 aa9.3□□□□□ -0.92
CD44-239ENST00000639002 RASSF7Q02833 373 aa9.3□□□□□ -0.92
CD44-239ENST00000639002 PCDHGC4Q9Y5F7 938 aa9.3□□□□□ -0.92
CD44-239ENST00000639002 SFI1A8K8P3 1242 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 OIP5O43482 229 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 FGFR3P22607 806 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 MAP2K3P46734 347 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 ARSJQ5FYB0 599 aaPredicted RBP9.29□□□□□ -0.92
CD44-239ENST00000639002 SIX5Q8N196 739 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 OXCT2Q9BYC2 517 aaPredicted RBP9.29□□□□□ -0.92
CD44-239ENST00000639002 PPP1R12CQ9BZL4 782 aa9.29□□□□□ -0.92
CD44-239ENST00000639002 NSFL1CQ9UNZ2 370 aaKnown RBP9.29□□□□□ -0.92
CD44-239ENST00000639002 EML1O00423 815 aa9.28□□□□□ -0.92
CD44-239ENST00000639002 MARSP56192 900 aaKnown RBP9.28□□□□□ -0.92
CD44-239ENST00000639002 TNP2Q05952 138 aa9.28□□□□□ -0.92
CD44-239ENST00000639002 NBPF1Q3BBV0 1214 aa9.28□□□□□ -0.92
CD44-239ENST00000639002 KANK4Q5T7N3 995 aaPredicted RBP9.28□□□□□ -0.92
CD44-239ENST00000639002 ZNF594Q96JF6 807 aaPredicted RBP9.28□□□□□ -0.92
CD44-239ENST00000639002 CALR3Q96L12 384 aaKnown RBP9.28□□□□□ -0.92
CD44-239ENST00000639002 TSPAN10Q9H1Z9 355 aaPredicted RBP9.28□□□□□ -0.92
CD44-239ENST00000639002 LRRC4BQ9NT99 713 aa9.28□□□□□ -0.92
CD44-239ENST00000639002 M0R2N6 131 aa9.27□□□□□ -0.93
CD44-239ENST00000639002 ATXN7O15265 892 aaPredicted RBP9.27□□□□□ -0.93
CD44-239ENST00000639002 FIGNL1Q6PIW4 674 aa9.27□□□□□ -0.93
CD44-239ENST00000639002 POTEAQ6S8J7 498 aa9.27□□□□□ -0.93
CD44-239ENST00000639002 TSEN2Q8NCE0 465 aaKnown RBP9.27□□□□□ -0.93
CD44-239ENST00000639002 ENAMQ9NRM1 1142 aa9.27□□□□□ -0.93
CD44-239ENST00000639002 CNTNAP5Q8WYK1 1306 aa9.27□□□□□ -0.93
CD44-239ENST00000639002 SHISA8B8ZZ34 492 aa9.26□□□□□ -0.93
CD44-239ENST00000639002 MAPTP10636 758 aaKnown RBP9.26□□□□□ -0.93
CD44-239ENST00000639002 TATP17735 454 aaPredicted RBP9.26□□□□□ -0.93
CD44-239ENST00000639002 IRS1P35568 1242 aa9.26□□□□□ -0.93
CD44-239ENST00000639002 C21orf2O43822 256 aa9.25□□□□□ -0.93
CD44-239ENST00000639002 GDF11O95390 407 aa9.25□□□□□ -0.93
CD44-239ENST00000639002 BMP4P12644 408 aa9.25□□□□□ -0.93
CD44-239ENST00000639002 RASA1P20936 1047 aa9.25□□□□□ -0.93
CD44-239ENST00000639002 STRN4Q9NRL3 753 aa9.25□□□□□ -0.93
CD44-239ENST00000639002 ZNF777Q9ULD5 760 aaPredicted RBP9.25□□□□□ -0.93
CD44-239ENST00000639002 SERTM1A2A2V5 107 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 DCDC2BA2VCK2 349 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 CRTC2Q53ET0 693 aaPredicted RBP9.24□□□□□ -0.93
CD44-239ENST00000639002 TMEM151AQ8N4L1 468 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 KCTD17Q8N5Z5 321 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 GALNT6Q8NCL4 622 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 NEDD1Q8NHV4 660 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 SCARF2Q96GP6 870 aaPredicted RBP9.24□□□□□ -0.93
CD44-239ENST00000639002 KLF15Q9UIH9 416 aa9.24□□□□□ -0.93
CD44-239ENST00000639002 RNF225M0QZC1 329 aaPredicted RBP9.23□□□□□ -0.93
CD44-239ENST00000639002 PTK7Q13308 1070 aa9.23□□□□□ -0.93
CD44-239ENST00000639002 SAMD5Q5TGI4 173 aa9.23□□□□□ -0.93
CD44-239ENST00000639002 BICDL1Q6ZP65 573 aa9.23□□□□□ -0.93
CD44-239ENST00000639002 ZNF232Q9UNY5 417 aa9.23□□□□□ -0.93
CD44-239ENST00000639002 KHNYNO15037 678 aaKnown RBP9.22□□□□□ -0.93
CD44-239ENST00000639002 EFSO43281 561 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 FAM157BP0CG42 384 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 HOXB4P17483 251 aaPredicted RBP9.22□□□□□ -0.93
CD44-239ENST00000639002 CD33P20138 364 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 SNRPNP63162 240 aaKnown RBP9.22□□□□□ -0.93
CD44-239ENST00000639002 CFAP70Q5T0N1 1121 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 FAM182BQ5T319 152 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 EDARADDQ8WWZ3 215 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 GGA1Q9UJY5 639 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 GDF2Q9UK05 429 aaPredicted RBP9.22□□□□□ -0.93
CD44-239ENST00000639002 HCN4Q9Y3Q4 1203 aa9.22□□□□□ -0.93
CD44-239ENST00000639002 LMOD1P29536 600 aaPredicted RBP9.21□□□□□ -0.94
CD44-239ENST00000639002 HIRAP54198 1017 aaPredicted RBP9.21□□□□□ -0.94
CD44-239ENST00000639002 PSMA6P60900 246 aaKnown RBP9.21□□□□□ -0.94
CD44-239ENST00000639002 LRRC69Q6ZNQ3 347 aa9.21□□□□□ -0.94
CD44-239ENST00000639002 DNMT3AQ9Y6K1 912 aaPredicted RBP9.21□□□□□ -0.94
CD44-239ENST00000639002 ARAFP10398 606 aa9.2□□□□□ -0.94
CD44-239ENST00000639002 SEC13P55735 322 aa9.2□□□□□ -0.94
CD44-239ENST00000639002 GRIN2CQ14957 1233 aa9.2□□□□□ -0.94
CD44-239ENST00000639002 SLCO4C1Q6ZQN7 724 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms