RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF446Q9NWS9 450 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 WDR33Q9C0J8 1336 aaKnown RBP6.67□□□□□ -1.34
SCN1A-216ENST00000637968 CDKL5O76039 1030 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 ST5P78524 1137 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 LUZP1Q86V48 1076 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC50Q8IVM0 306 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 RNF168Q8IYW5 571 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-216ENST00000637968 ADAM21Q9UKJ8 722 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 MRFAP1Q9Y605 127 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 GRIN2BQ13224 1484 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 MX1P20591 662 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 DUSP27Q5VZP5 1158 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 FAM114A1Q8IWE2 563 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 CFTRP13569 1480 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC189A1A4V9 331 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 GOLGA6L9A6NEM1 432 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 POTEB2H3BUK9 544 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 SRGAP3O43295 1099 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 RBM6P78332 1123 aaKnown RBP6.67□□□□□ -1.34
SCN1A-216ENST00000637968 PRPHP41219 470 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC181Q5TID7 509 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 ANKRD45Q5TZF3 282 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 TAX1BP1Q86VP1 789 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 IQCA1Q86XH1 822 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 IQCGQ9H095 443 aaKnown RBP6.67□□□□□ -1.34
SCN1A-216ENST00000637968 FGD5Q6ZNL6 1462 aa6.67□□□□□ -1.34
SCN1A-216ENST00000637968 SKILP12757 684 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 RANBP1P43487 201 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 LRRC23Q53EV4 343 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-216ENST00000637968 LNPKQ9C0E8 428 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 KDM4CQ9H3R0 1056 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 EID1Q9Y6B2 187 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 ARHGAP35Q9NRY4 1499 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 CEP85LQ5SZL2 805 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 TMTC2Q8N394 836 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 MIA2Q96PC5 1412 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 KIAA1107Q9UPP5 1409 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 FRMD3A2A2Y4 597 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 PPFIA2O75334 1257 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 PPFIA4O75335 1185 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 NOL8Q76FK4 1167 aaKnown RBP6.66□□□□□ -1.34
SCN1A-216ENST00000637968 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-216ENST00000637968 TRIM74Q86UV6 250 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 TRIM73Q86UV7 250 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 SWAP70Q9UH65 585 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 CAPN7Q9Y6W3 813 aa6.66□□□□□ -1.34
SCN1A-216ENST00000637968 ZKSCAN2Q63HK3 967 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 FAM200AQ8TCP9 573 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 AQRO60306 1485 aaKnown RBP eCLIP6.65□□□□□ -1.34
SCN1A-216ENST00000637968 ANKRD65E5RJM6 399 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 HNRNPH1P31943 449 aaKnown RBP6.65□□□□□ -1.34
SCN1A-216ENST00000637968 SLFN5Q08AF3 891 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 HDXQ7Z353 690 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 MSL3Q8N5Y2 521 aaKnown RBP6.65□□□□□ -1.34
SCN1A-216ENST00000637968 IQUBQ8NA54 791 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC114Q96M63 670 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 LRRCC1Q9C099 1032 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 DDX19BQ9UMR2 479 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 MYOM3Q5VTT5 1437 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 A0A0G2JS52 829 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 MAP3K11Q16584 847 aa6.65□□□□□ -1.34
SCN1A-216ENST00000637968 RNF187Q5TA31 235 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-216ENST00000637968 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.65□□□□□ -1.34
SCN1A-216ENST00000637968 ANKRD18BA2A2Z9 1011 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 HMMRO75330 724 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 GSDMDP57764 484 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 NEUROD2Q15784 382 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 HDGFL1Q5TGJ6 251 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 HHATQ5VTY9 493 aa6.65□□□□□ -1.35
SCN1A-216ENST00000637968 INTS3Q68E01 1043 aaKnown RBP6.65□□□□□ -1.35
SCN1A-216ENST00000637968 FIBPO43427 364 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 EVCP57679 992 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC158Q5M9N0 1113 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC30Q5VVM6 783 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 TSHZ1Q6ZSZ6 1077 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 B4GALNT4Q76KP1 1039 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 MPHOSPH9Q99550 1183 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 TRAK1Q9UPV9 953 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 PTPRCP08575 1304 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 ARHGAP25P42331 645 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 PLA2G4AP47712 749 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC96Q2M329 555 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 ZSCAN25Q6NSZ9 544 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC26Q8TAB7 109 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 SCLT1Q96NL6 688 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 TRIM4Q9C037 500 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 ADAMTS8Q9UP79 889 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 NESP48681 1621 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 KIF3BO15066 747 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 DDIT3P35638 169 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 UBE2HP62256 183 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 CCT2P78371 535 aaKnown RBP6.64□□□□□ -1.35
SCN1A-216ENST00000637968 ANKRD23Q86SG2 305 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 DZIP1LQ8IYY4 767 aaKnown RBP6.64□□□□□ -1.35
SCN1A-216ENST00000637968 AFAP1L1Q8TED9 768 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 TEX13AQ9BXU3 409 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-216ENST00000637968 NUP62CLQ9H1M0 184 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 ZCCHC17Q9NP64 241 aaKnown RBP6.64□□□□□ -1.35
SCN1A-216ENST00000637968 AP1G2O75843 785 aa6.64□□□□□ -1.35
SCN1A-216ENST00000637968 KIF4AO95239 1232 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms