RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 IP6K1Q92551 441 aa15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 GDPD2Q9HCC8 539 aa15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 NSFL1CQ9UNZ2 370 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-214ENST00000621814 C9orf78Q9NZ63 289 aaPredicted RBP15.71■□□□□ 0.11
CCDC88A-214ENST00000621814 ISY1Q9ULR0 285 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-214ENST00000621814 SPG7Q9UQ90 795 aa15.71■□□□□ 0.11
CCDC88A-214ENST00000621814 PIK3C2AO00443 1686 aa15.71■□□□□ 0.11
CCDC88A-214ENST00000621814 ORAI2Q96SN7 254 aa15.71■□□□□ 0.11
CCDC88A-214ENST00000621814 NALCNQ8IZF0 1738 aa15.71■□□□□ 0.1
CCDC88A-214ENST00000621814 SSH3Q8TE77 659 aa15.71■□□□□ 0.1
CCDC88A-214ENST00000621814 PRIM1P49642 420 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 CLEC17AQ6ZS10 378 aa15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 DDX54Q8TDD1 881 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 SYCE3A1L190 88 aa15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 C1orf141Q5JVX7 400 aa15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 PA2G4Q9UQ80 394 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-214ENST00000621814 PROSER3Q2NL68 480 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 CWF19L2Q2TBE0 894 aaKnown RBP15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 CPA1P15085 419 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 BEND3Q5T5X7 828 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 MAP3K2Q9Y2U5 619 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 CLCN1P35523 988 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 RNF214Q8ND24 703 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 STAP2Q9UGK3 403 aa15.69■□□□□ 0.1
CCDC88A-214ENST00000621814 ANKLE2Q86XL3 938 aa15.68■□□□□ 0.1
CCDC88A-214ENST00000621814 KIF1BPQ96EK5 621 aa15.68■□□□□ 0.1
CCDC88A-214ENST00000621814 RBSNQ9H1K0 784 aa15.68■□□□□ 0.1
CCDC88A-214ENST00000621814 PLEKHO1Q53GL0 409 aaPredicted RBP15.68■□□□□ 0.1
CCDC88A-214ENST00000621814 KIAA1211Q6ZU35 1233 aa15.68■□□□□ 0.1
CCDC88A-214ENST00000621814 FMN2Q9NZ56 1722 aa15.67■□□□□ 0.1
CCDC88A-214ENST00000621814 TMEM63CQ9P1W3 806 aa15.67■□□□□ 0.1
CCDC88A-214ENST00000621814 RAB11FIP3O75154 756 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 GCP02774 474 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 PI4K2BQ8TCG2 481 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 ZC3H6P61129 1189 aaKnown RBP15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 CNTROBQ8N137 903 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 MCM2P49736 904 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 SIL1Q9H173 461 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 ARHGAP23Q9P227 1491 aa15.66■□□□□ 0.1
CCDC88A-214ENST00000621814 AKAP4Q5JQC9 854 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 SLIT1O75093 1534 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 CCDC173Q0VFZ6 552 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 POLA2Q14181 598 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 RASEFQ8IZ41 740 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 DIAPH3Q9NSV4 1193 aa15.65■□□□□ 0.1
CCDC88A-214ENST00000621814 MYL6BP14649 208 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 SLC39A6Q13433 755 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 CLASRPQ8N2M8 674 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 KCNH5Q8NCM2 988 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 ANKRD24Q8TF21 1146 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 BABAM1Q9NWV8 329 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 DBF4Q9UBU7 674 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 NWD1Q149M9 1564 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 RNMTO43148 476 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 PIP4K2AP48426 406 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 JARID2Q92833 1246 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 AXIN2Q9Y2T1 843 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 ANKARQ7Z5J8 1434 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 IFIT2P09913 472 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 HSPA4P34932 840 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 ANAPC15P60006 121 aa15.64■□□□□ 0.09
CCDC88A-214ENST00000621814 BRD1O95696 1058 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 ZNF445P59923 1031 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 SGSM2O43147 1006 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 AACSQ86V21 672 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 SNX14Q9Y5W7 946 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 CEMIPQ8WUJ3 1361 aa15.63■□□□□ 0.09
CCDC88A-214ENST00000621814 GADD45BO75293 160 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 CASTP20810 708 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 KLHDC4Q8TBB5 520 aa15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 CCDC8Q9H0W5 538 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 ADCY9O60503 1353 aa15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 KCNJ4P48050 445 aa15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 AK2P54819 239 aa15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 CUL4AQ13619 759 aa15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 PRPF40BQ6NWY9 871 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-214ENST00000621814 GIGYF1O75420 1035 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-214ENST00000621814 MSNP26038 577 aaKnown RBP15.61■□□□□ 0.09
CCDC88A-214ENST00000621814 MPNDQ8N594 471 aa15.61■□□□□ 0.09
CCDC88A-214ENST00000621814 PTH1RQ03431 593 aa15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 HSP90AB4PQ58FF6 505 aa15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 NLRP2Q9NX02 1062 aa15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 CCDC9Q9Y3X0 531 aaKnown RBP15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 USP48Q86UV5 1035 aa15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 DDX17Q92841 729 aaKnown RBP15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 LSG1Q9H089 658 aaKnown RBP15.6■□□□□ 0.09
CCDC88A-214ENST00000621814 GLRX3O76003 335 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 AMOTQ4VCS5 1084 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 KSR2Q6VAB6 950 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 RIC3Q7Z5B4 369 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 RAD50Q92878 1312 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 JAKMIP1Q96N16 626 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 XRN1Q8IZH2 1706 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 ADCK5Q3MIX3 580 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 INTS4Q96HW7 963 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 SUCLG2Q96I99 432 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 ECHDC1Q9NTX5 307 aa15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 FAM208AQ9UK61 1670 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-214ENST00000621814 AOX1Q06278 1338 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms