RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 A0A087WZG4 1122 aa19.33■□□□□ 0.68
CPSF1-213ENST00000620219 FAM98CQ17RN3 349 aaKnown RBP19.33■□□□□ 0.68
CPSF1-213ENST00000620219 CLASRPQ8N2M8 674 aaKnown RBP19.33■□□□□ 0.68
CPSF1-213ENST00000620219 KDRP35968 1356 aa19.32■□□□□ 0.68
CPSF1-213ENST00000620219 CEP85Q6P2H3 762 aa19.32■□□□□ 0.68
CPSF1-213ENST00000620219 KSR2Q6VAB6 950 aa19.32■□□□□ 0.68
CPSF1-213ENST00000620219 KIAA1211Q6ZU35 1233 aa19.32■□□□□ 0.68
CPSF1-213ENST00000620219 ANKRD44Q8N8A2 993 aa19.32■□□□□ 0.68
CPSF1-213ENST00000620219 PRIM1P49642 420 aaKnown RBP19.31■□□□□ 0.68
CPSF1-213ENST00000620219 C22orf23Q9BZE7 217 aa19.31■□□□□ 0.68
CPSF1-213ENST00000620219 ANKRD26Q9UPS8 1709 aa19.31■□□□□ 0.68
CPSF1-213ENST00000620219 ADGRB2O60241 1585 aa19.31■□□□□ 0.68
CPSF1-213ENST00000620219 CARD10Q9BWT7 1032 aa19.31■□□□□ 0.68
CPSF1-213ENST00000620219 DDX21Q9NR30 783 aaKnown RBP eCLIP19.31■□□□□ 0.68
CPSF1-213ENST00000620219 SMC5Q8IY18 1101 aa19.31■□□□□ 0.68
CPSF1-213ENST00000620219 KNDC1Q76NI1 1749 aa19.3■□□□□ 0.68
CPSF1-213ENST00000620219 ABCC4O15439 1325 aa19.3■□□□□ 0.68
CPSF1-213ENST00000620219 NBPF7P0C2Y1 421 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-213ENST00000620219 NUCB1Q02818 461 aa19.3■□□□□ 0.68
CPSF1-213ENST00000620219 HSP90AB4PQ58FF6 505 aa19.3■□□□□ 0.68
CPSF1-213ENST00000620219 BABAM1Q9NWV8 329 aa19.3■□□□□ 0.68
CPSF1-213ENST00000620219 ANO2Q9NQ90 1003 aa19.29■□□□□ 0.68
CPSF1-213ENST00000620219 BICDL1Q6ZP65 573 aa19.29■□□□□ 0.68
CPSF1-213ENST00000620219 OTUD7AQ8TE49 926 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-213ENST00000620219 PA2G4Q9UQ80 394 aaKnown RBP19.28■□□□□ 0.68
CPSF1-213ENST00000620219 CDC45O75419 566 aa19.28■□□□□ 0.68
CPSF1-213ENST00000620219 MON2Q7Z3U7 1717 aa19.28■□□□□ 0.68
CPSF1-213ENST00000620219 TAOK2Q9UL54 1235 aa19.27■□□□□ 0.68
CPSF1-213ENST00000620219 FAM182BQ5T319 152 aa19.27■□□□□ 0.68
CPSF1-213ENST00000620219 SIRT2Q8IXJ6 389 aa19.27■□□□□ 0.68
CPSF1-213ENST00000620219 ASAP1Q9ULH1 1129 aa19.27■□□□□ 0.67
CPSF1-213ENST00000620219 SOS2Q07890 1332 aaPredicted RBP19.27■□□□□ 0.67
CPSF1-213ENST00000620219 TPRNQ4KMQ1 711 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 DNAJC10Q8IXB1 793 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 PNMA6EA0A0J9YXQ4 647 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 TBC1D2BQ9UPU7 963 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 MCCP23508 829 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 AACSQ86V21 672 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 CRB1P82279 1406 aa19.26■□□□□ 0.67
CPSF1-213ENST00000620219 GRM8O00222 908 aa19.25■□□□□ 0.67
CPSF1-213ENST00000620219 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.25■□□□□ 0.672e-6■■□□□ 11.9
CPSF1-213ENST00000620219 DIAPH3Q9NSV4 1193 aa19.25■□□□□ 0.67
CPSF1-213ENST00000620219 LINS1Q8NG48 757 aa19.25■□□□□ 0.67
CPSF1-213ENST00000620219 HOXB7P09629 217 aa19.24■□□□□ 0.67
CPSF1-213ENST00000620219 ATP6V1AP38606 617 aa19.24■□□□□ 0.67
CPSF1-213ENST00000620219 CCDC8Q9H0W5 538 aaPredicted RBP19.24■□□□□ 0.67
CPSF1-213ENST00000620219 USP44Q9H0E7 712 aa19.24■□□□□ 0.67
CPSF1-213ENST00000620219 DCTPP1Q9H773 170 aa19.24■□□□□ 0.67
CPSF1-213ENST00000620219 ATP8B2P98198 1209 aa19.23■□□□□ 0.67
CPSF1-213ENST00000620219 XRN1Q8IZH2 1706 aaKnown RBP19.23■□□□□ 0.67
CPSF1-213ENST00000620219 AKAP12Q02952 1782 aa19.23■□□□□ 0.67
CPSF1-213ENST00000620219 MX1P20591 662 aa19.22■□□□□ 0.67
CPSF1-213ENST00000620219 NAP1L2Q9ULW6 460 aaPredicted RBP19.22■□□□□ 0.67
CPSF1-213ENST00000620219 EIF5BO60841 1220 aaKnown RBP19.22■□□□□ 0.67
CPSF1-213ENST00000620219 KLHDC4Q8TBB5 520 aa19.22■□□□□ 0.67
CPSF1-213ENST00000620219 DNAJC2Q99543 621 aaKnown RBP19.22■□□□□ 0.67
CPSF1-213ENST00000620219 FGD1P98174 961 aa19.21■□□□□ 0.67
CPSF1-213ENST00000620219 BRPF1P55201 1214 aaPredicted RBP19.21■□□□□ 0.67
CPSF1-213ENST00000620219 KIF1BPQ96EK5 621 aa19.21■□□□□ 0.67
CPSF1-213ENST00000620219 NALCNQ8IZF0 1738 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 DCCP43146 1447 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 CCDC57Q2TAC2 916 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 TTLL7Q6ZT98 887 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 USP21Q9UK80 565 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 CHD2O14647 1828 aaKnown RBP19.2■□□□□ 0.66
CPSF1-213ENST00000620219 ERC2O15083 957 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 ERVV-2B6SEH9 535 aa19.2■□□□□ 0.66
CPSF1-213ENST00000620219 REC8O95072 547 aa19.19■□□□□ 0.66
CPSF1-213ENST00000620219 CWC25Q9NXE8 425 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-213ENST00000620219 TRMT112Q9UI30 125 aaKnown RBP19.19■□□□□ 0.66
CPSF1-213ENST00000620219 PEAK1Q9H792 1746 aa19.19■□□□□ 0.66
CPSF1-213ENST00000620219 FMN2Q9NZ56 1722 aa19.19■□□□□ 0.66
CPSF1-213ENST00000620219 KCNQ4P56696 695 aa19.19■□□□□ 0.66
CPSF1-213ENST00000620219 SOS1Q07889 1333 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-213ENST00000620219 RHPN1Q8TCX5 695 aa19.19■□□□□ 0.66
CPSF1-213ENST00000620219 BICC1Q9H694 974 aaKnown RBP19.19■□□□□ 0.66
CPSF1-213ENST00000620219 ALDH1L1O75891 902 aa19.18■□□□□ 0.66
CPSF1-213ENST00000620219 LMBR1LQ6UX01 489 aa19.18■□□□□ 0.66
CPSF1-213ENST00000620219 PIK3C2AO00443 1686 aa19.18■□□□□ 0.66
CPSF1-213ENST00000620219 TEX13AQ9BXU3 409 aaPredicted RBP19.18■□□□□ 0.66
CPSF1-213ENST00000620219 TBC1D9Q6ZT07 1266 aa19.18■□□□□ 0.66
CPSF1-213ENST00000620219 ERC1Q8IUD2 1116 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 CNNM1Q9NRU3 951 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 FSD1Q9BTV5 496 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 NCOA3Q9Y6Q9 1424 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 FRAT2O75474 233 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-213ENST00000620219 PIGBQ92521 554 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 BEND3Q5T5X7 828 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 BOLA2Q9H3K6 86 aa19.17■□□□□ 0.66
CPSF1-213ENST00000620219 CNTROBQ8N137 903 aa19.16■□□□□ 0.66
CPSF1-213ENST00000620219 PLEKHM2Q8IWE5 1019 aa19.15■□□□□ 0.66
CPSF1-213ENST00000620219 SUCLG2Q96I99 432 aa19.15■□□□□ 0.66
CPSF1-213ENST00000620219 FAM89AQ96GI7 184 aa19.15■□□□□ 0.66
CPSF1-213ENST00000620219 METTL22Q9BUU2 404 aaPredicted RBP19.15■□□□□ 0.66
CPSF1-213ENST00000620219 PHF14O94880 888 aa19.15■□□□□ 0.66
CPSF1-213ENST00000620219 BMP2KLQ5H9B9 411 aa19.15■□□□□ 0.66
CPSF1-213ENST00000620219 PDE1AP54750 535 aa19.14■□□□□ 0.66
CPSF1-213ENST00000620219 CWC27Q6UX04 472 aaKnown RBP19.14■□□□□ 0.66
CPSF1-213ENST00000620219 NRKQ7Z2Y5 1582 aa19.14■□□□□ 0.65
CPSF1-213ENST00000620219 SDSP20132 328 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms