RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.31□□□□□ -0.12
TPM3-223ENST00000611659 ATP6V1DQ9Y5K8 247 aa14.31□□□□□ -0.12
TPM3-223ENST00000611659 CLTCQ00610 1675 aaKnown RBP14.31□□□□□ -0.12
TPM3-223ENST00000611659 TCHHQ07283 1943 aa14.31□□□□□ -0.12
TPM3-223ENST00000611659 GNAI3P08754 354 aa14.31□□□□□ -0.12
TPM3-223ENST00000611659 CCDC83Q8IWF9 413 aa14.31□□□□□ -0.12
TPM3-223ENST00000611659 AATKQ6ZMQ8 1374 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 GOLGA6L6A8MZA4 724 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 ATP8B2P98198 1209 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 HSP90AB2PQ58FF8 381 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 LIMCH1Q9UPQ0 1083 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 SNX14Q9Y5W7 946 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 RUFY3Q7L099 469 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 DRC7Q8IY82 874 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 RASEFQ8IZ41 740 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 SPG7Q9UQ90 795 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 CAMK4Q16566 473 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 CWC27Q6UX04 472 aaKnown RBP14.3□□□□□ -0.12
TPM3-223ENST00000611659 GTPBP4Q9BZE4 634 aaKnown RBP14.3□□□□□ -0.12
TPM3-223ENST00000611659 SSH2Q76I76 1423 aa14.3□□□□□ -0.12
TPM3-223ENST00000611659 CASTP20810 708 aaKnown RBP14.29□□□□□ -0.12
TPM3-223ENST00000611659 PTGS1P23219 599 aa14.29□□□□□ -0.12
TPM3-223ENST00000611659 FLIIQ13045 1269 aa14.29□□□□□ -0.12
TPM3-223ENST00000611659 DDX54Q8TDD1 881 aaKnown RBP14.29□□□□□ -0.12
TPM3-223ENST00000611659 SURF6O75683 361 aaKnown RBP14.28□□□□□ -0.12
TPM3-223ENST00000611659 LARGE1O95461 756 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 CCDC192P0DO97 292 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 GJB2P29033 226 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 STAP2Q9UGK3 403 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 ALKQ9UM73 1620 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 MYO5BQ9ULV0 1848 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 FUCA2Q9BTY2 467 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 FAM69CQ0P6D2 419 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 C16orf45Q96MC5 204 aaPredicted RBP14.28□□□□□ -0.12
TPM3-223ENST00000611659 CCDC61Q9Y6R9 512 aa14.28□□□□□ -0.12
TPM3-223ENST00000611659 RAD50Q92878 1312 aa14.27□□□□□ -0.12
TPM3-223ENST00000611659 SGSM2O43147 1006 aa14.27□□□□□ -0.13
TPM3-223ENST00000611659 PLEKHG5O94827 1062 aa14.27□□□□□ -0.13
TPM3-223ENST00000611659 TPM3P06753 285 aa14.27□□□□□ -0.13
TPM3-223ENST00000611659 UBTFL1P0CB47 393 aaPredicted RBP14.27□□□□□ -0.13
TPM3-223ENST00000611659 FERMT3Q86UX7 667 aa14.27□□□□□ -0.13
TPM3-223ENST00000611659 LUZP1Q86V48 1076 aa14.27□□□□□ -0.13
TPM3-223ENST00000611659 TTC14Q96N46 770 aa14.26□□□□□ -0.13
TPM3-223ENST00000611659 CPS1P31327 1500 aa14.26□□□□□ -0.13
TPM3-223ENST00000611659 MTHFSDQ2M296 383 aaKnown RBP14.26□□□□□ -0.13
TPM3-223ENST00000611659 AEBP2Q6ZN18 517 aaPredicted RBP14.26□□□□□ -0.13
TPM3-223ENST00000611659 CKAP2LQ8IYA6 745 aa14.26□□□□□ -0.13
TPM3-223ENST00000611659 LRMPQ12912 555 aa14.26□□□□□ -0.13
TPM3-223ENST00000611659 CCDC186Q7Z3E2 898 aa14.26□□□□□ -0.13
TPM3-223ENST00000611659 FAM173BQ6P4H8 233 aa14.25□□□□□ -0.13
TPM3-223ENST00000611659 JAKMIP1Q96N16 626 aaKnown RBP14.25□□□□□ -0.13
TPM3-223ENST00000611659 MTMR6Q9Y217 621 aa14.25□□□□□ -0.13
TPM3-223ENST00000611659 KIF20AO95235 890 aa14.25□□□□□ -0.13
TPM3-223ENST00000611659 NECAB1Q8N987 351 aa14.25□□□□□ -0.13
TPM3-223ENST00000611659 CRB1P82279 1406 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 ZNF771Q7L3S4 317 aaPredicted RBP14.24□□□□□ -0.13
TPM3-223ENST00000611659 CNTROBQ8N137 903 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 ANKRD7Q92527 254 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 LSG1Q9H089 658 aaKnown RBP14.24□□□□□ -0.13
TPM3-223ENST00000611659 PDRG1Q9NUG6 133 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 CCDC30Q5VVM6 783 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 FAM200AQ8TCP9 573 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 TMEM131LA2VDJ0 1609 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 SOS1Q07889 1333 aaPredicted RBP14.24□□□□□ -0.13
TPM3-223ENST00000611659 GOLGA6L4A6NEF3 574 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 MAP3K11Q16584 847 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 PPP1R42Q7Z4L9 355 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 ZNF592Q92610 1267 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 TRIM5Q9C035 493 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 NUP62CLQ9H1M0 184 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 NRBP1Q9UHY1 535 aa14.24□□□□□ -0.13
TPM3-223ENST00000611659 ADCK5Q3MIX3 580 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 PRPF40BQ6NWY9 871 aaKnown RBP14.23□□□□□ -0.13
TPM3-223ENST00000611659 IL17RAQ96F46 866 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 USP44Q9H0E7 712 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 HYPKQ9NX55 129 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 LIG1P18858 919 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 TYRO3Q06418 890 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 NAA30Q147X3 362 aaPredicted RBP14.23□□□□□ -0.13
TPM3-223ENST00000611659 PI4K2BQ8TCG2 481 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 RHPN1Q8TCX5 695 aa14.23□□□□□ -0.13
TPM3-223ENST00000611659 MAP3K19Q56UN5 1328 aa14.22□□□□□ -0.13
TPM3-223ENST00000611659 SRGAP3O43295 1099 aa14.22□□□□□ -0.13
TPM3-223ENST00000611659 NCBP1Q09161 790 aaKnown RBP14.22□□□□□ -0.13
TPM3-223ENST00000611659 OS9Q13438 667 aaPredicted RBP14.22□□□□□ -0.13
TPM3-223ENST00000611659 CTIFO43310 598 aaKnown RBP14.22□□□□□ -0.13
TPM3-223ENST00000611659 TNNT1P13805 278 aa14.22□□□□□ -0.13
TPM3-223ENST00000611659 ANO6Q4KMQ2 910 aa14.22□□□□□ -0.13
TPM3-223ENST00000611659 LARP1BQ659C4 914 aaKnown RBP14.22□□□□□ -0.13
TPM3-223ENST00000611659 TNMDQ9H2S6 317 aa14.22□□□□□ -0.13
TPM3-223ENST00000611659 KCNJ4P48050 445 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 TTC6Q86TZ1 520 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 MRVI1Q9Y6F6 885 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 AOX1Q06278 1338 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 KRT85P78386 507 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 TFIP11Q9UBB9 837 aaKnown RBP14.21□□□□□ -0.13
TPM3-223ENST00000611659 CYP46A1Q9Y6A2 500 aa14.21□□□□□ -0.13
TPM3-223ENST00000611659 PTH1RQ03431 593 aa14.21□□□□□ -0.14
TPM3-223ENST00000611659 DACT1Q9NYF0 836 aa14.21□□□□□ -0.14
TPM3-223ENST00000611659 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms