RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SMC1BQ8NDV3 1235 aa11.72□□□□□ -0.53
TRIM28-214ENST00000600840 ARHGEF1Q92888 912 aaKnown RBP11.72□□□□□ -0.53
TRIM28-214ENST00000600840 HMGB2P26583 209 aaKnown RBP11.71□□□□□ -0.53
TRIM28-214ENST00000600840 MTHFSDQ2M296 383 aaKnown RBP11.71□□□□□ -0.53
TRIM28-214ENST00000600840 RC3H1Q5TC82 1133 aaKnown RBP11.71□□□□□ -0.53
TRIM28-214ENST00000600840 RTCBQ9Y3I0 505 aaKnown RBP11.71□□□□□ -0.53
TRIM28-214ENST00000600840 CNTNAP4Q9C0A0 1308 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 RNMTO43148 476 aaKnown RBP11.7□□□□□ -0.54
TRIM28-214ENST00000600840 DIAPH1O60610 1272 aaKnown RBP11.7□□□□□ -0.54
TRIM28-214ENST00000600840 RPS6KA4O75676 772 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 SLC39A6Q13433 755 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 AKAP4Q5JQC9 854 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 TRAPPC3LQ5T215 181 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 PNISRQ8TF01 805 aaKnown RBP11.7□□□□□ -0.54
TRIM28-214ENST00000600840 CCDC87Q9NVE4 849 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 ADAMTS7Q9UKP4 1686 aa11.7□□□□□ -0.54
TRIM28-214ENST00000600840 TIAM2Q8IVF5 1701 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 CCER2I3L3R5 266 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 GYS1P13807 737 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 CRKLP46109 303 aaKnown RBP11.69□□□□□ -0.54
TRIM28-214ENST00000600840 NLGN1Q8N2Q7 840 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 SLC52A2Q9HAB3 445 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 SRP68Q9UHB9 627 aaKnown RBP11.69□□□□□ -0.54
TRIM28-214ENST00000600840 CCDC88AQ3V6T2 1871 aa11.69□□□□□ -0.54
TRIM28-214ENST00000600840 CHRNA5P30532 468 aa11.68□□□□□ -0.54
TRIM28-214ENST00000600840 RASSF7Q02833 373 aa11.68□□□□□ -0.54
TRIM28-214ENST00000600840 INTS5Q6P9B9 1019 aaKnown RBP11.68□□□□□ -0.54
TRIM28-214ENST00000600840 DNAJC10Q8IXB1 793 aa11.68□□□□□ -0.54
TRIM28-214ENST00000600840 PIM2Q9P1W9 311 aa11.68□□□□□ -0.54
TRIM28-214ENST00000600840 DALRD3Q5D0E6 543 aaKnown RBP11.67□□□□□ -0.54
TRIM28-214ENST00000600840 PARP3Q9Y6F1 533 aa11.67□□□□□ -0.54
TRIM28-214ENST00000600840 MRC1P22897 1456 aa11.67□□□□□ -0.54
TRIM28-214ENST00000600840 U2SURPO15042 1029 aaKnown RBP11.66□□□□□ -0.54
TRIM28-214ENST00000600840 RFC4P35249 363 aa11.66□□□□□ -0.54
TRIM28-214ENST00000600840 FKBP8Q14318 412 aa11.66□□□□□ -0.54
TRIM28-214ENST00000600840 CFAP53Q96M91 514 aa11.66□□□□□ -0.54
TRIM28-214ENST00000600840 UBR2Q8IWV8 1755 aa11.65□□□□□ -0.54
TRIM28-214ENST00000600840 ADRA2BP18089 450 aa11.65□□□□□ -0.54
TRIM28-214ENST00000600840 DDR1Q08345 913 aa11.65□□□□□ -0.54
TRIM28-214ENST00000600840 IL17REQ8NFR9 667 aa11.65□□□□□ -0.54
TRIM28-214ENST00000600840 MKRN1Q9UHC7 482 aaKnown RBP11.65□□□□□ -0.54
TRIM28-214ENST00000600840 FOXN1O15353 648 aa11.64□□□□□ -0.55
TRIM28-214ENST00000600840 CYP19A1P11511 503 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-214ENST00000600840 PHACTR3Q96KR7 559 aa11.64□□□□□ -0.55
TRIM28-214ENST00000600840 PLEKHF1Q96S99 279 aa11.64□□□□□ -0.55
TRIM28-214ENST00000600840 ADAMTS8Q9UP79 889 aa11.64□□□□□ -0.55
TRIM28-214ENST00000600840 SIPA1L3O60292 1781 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-214ENST00000600840 USP42Q9H9J4 1324 aaKnown RBP11.63□□□□□ -0.55
TRIM28-214ENST00000600840 VEGFAP15692 232 aaPredicted RBP11.63□□□□□ -0.55
TRIM28-214ENST00000600840 RSPH6AQ9H0K4 717 aa11.63□□□□□ -0.55
TRIM28-214ENST00000600840 MRS2Q9HD23 443 aa11.63□□□□□ -0.55
TRIM28-214ENST00000600840 ZBTB1Q9Y2K1 713 aa11.63□□□□□ -0.55
TRIM28-214ENST00000600840 SOS1Q07889 1333 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-214ENST00000600840 DLEC1Q9Y238 1755 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 GLTPD2A6NH11 291 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 POTECB2RU33 542 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 KCNQ3O43525 872 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 TM4SF1P30408 202 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 FAM161AQ3B820 660 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 USPL1Q5W0Q7 1092 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 BCL2L12Q9HB09 334 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 NUDCQ9Y266 331 aa11.62□□□□□ -0.55
TRIM28-214ENST00000600840 AFDNP55196 1824 aaKnown RBP11.62□□□□□ -0.55
TRIM28-214ENST00000600840 PRKAR2BP31323 418 aa11.61□□□□□ -0.55
TRIM28-214ENST00000600840 PCNTO95613 3336 aa11.61□□□□□ -0.55
TRIM28-214ENST00000600840 GNAT3A8MTJ3 354 aa11.6□□□□□ -0.55
TRIM28-214ENST00000600840 POLRMTO00411 1230 aaKnown RBP11.6□□□□□ -0.55
TRIM28-214ENST00000600840 U2AF1L5P0DN76 240 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-214ENST00000600840 U2AF1Q01081 240 aaKnown RBP eCLIP11.6□□□□□ -0.555e-13■□□□□ 8.1
TRIM28-214ENST00000600840 ZNF496Q96IT1 587 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-214ENST00000600840 COL15A1P39059 1388 aa11.59□□□□□ -0.55
TRIM28-214ENST00000600840 POTEIP0CG38 1075 aa11.59□□□□□ -0.55
TRIM28-214ENST00000600840 POTEJP0CG39 1038 aa11.59□□□□□ -0.55
TRIM28-214ENST00000600840 LMNB1P20700 586 aa11.59□□□□□ -0.55
TRIM28-214ENST00000600840 CANXP27824 592 aaKnown RBP11.59□□□□□ -0.55
TRIM28-214ENST00000600840 NFIXQ14938 502 aa11.59□□□□□ -0.55
TRIM28-214ENST00000600840 ZC3H4Q9UPT8 1303 aaKnown RBP11.59□□□□□ -0.55
TRIM28-214ENST00000600840 NRXN2Q9P2S2 1712 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 CEMIPQ8WUJ3 1361 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 ZNF790Q6PG37 636 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 VSIG10Q8N0Z9 540 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 GAS2L2Q8NHY3 880 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 CREBZFQ9NS37 354 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 NARFQ9UHQ1 456 aa11.58□□□□□ -0.56
TRIM28-214ENST00000600840 HEG1Q9ULI3 1381 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 DICER1Q9UPY3 1922 aaKnown RBP11.57□□□□□ -0.56
TRIM28-214ENST00000600840 PRAMEF22A3QJZ6 481 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 NFKBIEO00221 500 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 ZPR1O75312 459 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 A1BGP04217 495 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 EIF5P55010 431 aaKnown RBP11.57□□□□□ -0.56
TRIM28-214ENST00000600840 TEFQ10587 303 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 DCTN1Q14203 1278 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 PRDM10Q9NQV6 1147 aa11.57□□□□□ -0.56
TRIM28-214ENST00000600840 CNTNAP1P78357 1384 aa11.56□□□□□ -0.56
TRIM28-214ENST00000600840 PIP4K2AP48426 406 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-214ENST00000600840 LBX1P52954 281 aa11.56□□□□□ -0.56
TRIM28-214ENST00000600840 MCM10Q7L590 875 aa11.56□□□□□ -0.56
TRIM28-214ENST00000600840 TTC5Q8N0Z6 440 aa11.56□□□□□ -0.56
TRIM28-214ENST00000600840 CARMIL3Q8ND23 1372 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms