RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PHF14O94880 888 aa25.63■■□□□ 1.69
SHKBP1-221ENST00000599833 BABAM1Q9NWV8 329 aa25.63■■□□□ 1.69
SHKBP1-221ENST00000599833 ATF5Q9Y2D1 282 aaPredicted RBP25.63■■□□□ 1.69
SHKBP1-221ENST00000599833 SOS1Q07889 1333 aaPredicted RBP25.63■■□□□ 1.69
SHKBP1-221ENST00000599833 RTCBQ9Y3I0 505 aaKnown RBP25.62■■□□□ 1.69
SHKBP1-221ENST00000599833 USP16Q9Y5T5 823 aa25.62■■□□□ 1.69
SHKBP1-221ENST00000599833 SENP3-EIF4A1A0A087X0R7 540 aa25.61■■□□□ 1.69
SHKBP1-221ENST00000599833 ZNF853P0CG23 659 aa25.61■■□□□ 1.69
SHKBP1-221ENST00000599833 NCBP3Q53F19 620 aaKnown RBP25.61■■□□□ 1.69
SHKBP1-221ENST00000599833 ARHGEF1Q92888 912 aaKnown RBP25.61■■□□□ 1.69
SHKBP1-221ENST00000599833 CCDC27Q2M243 656 aa25.6■■□□□ 1.69
SHKBP1-221ENST00000599833 GIGYF1O75420 1035 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-221ENST00000599833 ADRA2BP18089 450 aa25.59■■□□□ 1.69
SHKBP1-221ENST00000599833 FAM9BQ8IZU0 186 aa25.59■■□□□ 1.69
SHKBP1-221ENST00000599833 TEX13AQ9BXU3 409 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-221ENST00000599833 TSPYL4Q9UJ04 414 aa25.59■■□□□ 1.69
SHKBP1-221ENST00000599833 SNRPA1P09661 255 aaKnown RBP25.58■■□□□ 1.69
SHKBP1-221ENST00000599833 GOLGB1Q14789 3259 aaKnown RBP25.58■■□□□ 1.69
SHKBP1-221ENST00000599833 EIF5P55010 431 aaKnown RBP25.57■■□□□ 1.68
SHKBP1-221ENST00000599833 TRAPPC3LQ5T215 181 aa25.57■■□□□ 1.68
SHKBP1-221ENST00000599833 MIER1Q8N108 512 aa25.57■■□□□ 1.68
SHKBP1-221ENST00000599833 STARD3NLO95772 234 aa25.56■■□□□ 1.68
SHKBP1-221ENST00000599833 A1BGP04217 495 aa25.56■■□□□ 1.68
SHKBP1-221ENST00000599833 COL15A1P39059 1388 aa25.56■■□□□ 1.68
SHKBP1-221ENST00000599833 MSL1Q68DK7 614 aa25.55■■□□□ 1.68
SHKBP1-221ENST00000599833 WWC1Q8IX03 1113 aa25.55■■□□□ 1.68
SHKBP1-221ENST00000599833 CFAP44Q96MT7 982 aa25.55■■□□□ 1.68
SHKBP1-221ENST00000599833 SCN7AQ01118 1682 aa25.55■■□□□ 1.68
SHKBP1-221ENST00000599833 NBPF26B4DH59 902 aa25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 MSH5O43196 834 aa25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 GYS1P13807 737 aa25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 NBPF10Q6P3W6 841 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 NBPF15Q8N660 670 aa25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 USP42Q9H9J4 1324 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-221ENST00000599833 KRT24Q2M2I5 525 aa25.53■■□□□ 1.68
SHKBP1-221ENST00000599833 SRP68Q9UHB9 627 aaKnown RBP25.53■■□□□ 1.68
SHKBP1-221ENST00000599833 BCORQ6W2J9 1755 aa25.53■■□□□ 1.68
SHKBP1-221ENST00000599833 UTRNP46939 3433 aa25.52■■□□□ 1.68
SHKBP1-221ENST00000599833 CANXP27824 592 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-221ENST00000599833 MBIPQ9NS73 344 aa25.52■■□□□ 1.68
SHKBP1-221ENST00000599833 IFT57Q9NWB7 429 aa25.52■■□□□ 1.68
SHKBP1-221ENST00000599833 IL6STP40189 918 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-221ENST00000599833 PIP4K2AP48426 406 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-221ENST00000599833 BCL2L12Q9HB09 334 aa25.51■■□□□ 1.67
SHKBP1-221ENST00000599833 RFC4P35249 363 aa25.49■■□□□ 1.67
SHKBP1-221ENST00000599833 ZNF521Q96K83 1311 aa25.48■■□□□ 1.67
SHKBP1-221ENST00000599833 LRP10Q7Z4F1 713 aa25.48■■□□□ 1.67
SHKBP1-221ENST00000599833 ARXQ96QS3 562 aa25.48■■□□□ 1.67
SHKBP1-221ENST00000599833 NARFQ9UHQ1 456 aa25.48■■□□□ 1.67
SHKBP1-221ENST00000599833 LAS1LQ9Y4W2 734 aaKnown RBP25.48■■□□□ 1.67
SHKBP1-221ENST00000599833 IL16Q14005 1332 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 GNAI1P63096 354 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 FKBP8Q14318 412 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 PDIA6Q15084 440 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 USPL1Q5W0Q7 1092 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 KIF13BQ9NQT8 1826 aa25.46■■□□□ 1.67
SHKBP1-221ENST00000599833 CALD1Q05682 793 aaKnown RBP25.45■■□□□ 1.66
SHKBP1-221ENST00000599833 NRXN2Q9P2S2 1712 aa25.44■■□□□ 1.66
SHKBP1-221ENST00000599833 SPINK5Q9NQ38 1064 aaPredicted RBP25.44■■□□□ 1.66
SHKBP1-221ENST00000599833 KIAA1551Q9HCM1 1747 aa25.43■■□□□ 1.66
SHKBP1-221ENST00000599833 POLD1P28340 1107 aa25.43■■□□□ 1.66
SHKBP1-221ENST00000599833 NLGN1Q8N2Q7 840 aa25.43■■□□□ 1.66
SHKBP1-221ENST00000599833 FHDC1Q9C0D6 1143 aaPredicted RBP25.43■■□□□ 1.66
SHKBP1-221ENST00000599833 SALL2Q9Y467 1007 aaPredicted RBP25.43■■□□□ 1.66
SHKBP1-221ENST00000599833 AFDNP55196 1824 aaKnown RBP25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 CAMTA2O94983 1202 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 MMP10P09238 476 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 TM4SF1P30408 202 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 DDR1Q08345 913 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 WDR63Q8IWG1 891 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 TBC1D2BQ9UPU7 963 aa25.42■■□□□ 1.66
SHKBP1-221ENST00000599833 ERBB4Q15303 1308 aa25.41■■□□□ 1.66
SHKBP1-221ENST00000599833 NGEFQ8N5V2 710 aa25.41■■□□□ 1.66
SHKBP1-221ENST00000599833 TSR2Q969E8 191 aaKnown RBP25.41■■□□□ 1.66
SHKBP1-221ENST00000599833 A0A087WZG4 1122 aa25.4■■□□□ 1.66
SHKBP1-221ENST00000599833 HOXB7P09629 217 aa25.4■■□□□ 1.66
SHKBP1-221ENST00000599833 PROSER3Q2NL68 480 aa25.4■■□□□ 1.66
SHKBP1-221ENST00000599833 C8orf58Q8NAV2 365 aa25.4■■□□□ 1.66
SHKBP1-221ENST00000599833 PPP1R1BQ9UD71 204 aaPredicted RBP25.4■■□□□ 1.66
SHKBP1-221ENST00000599833 DUSP27Q5VZP5 1158 aa25.39■■□□□ 1.66
SHKBP1-221ENST00000599833 SYT17Q9BSW7 474 aa25.39■■□□□ 1.66
SHKBP1-221ENST00000599833 ZPR1O75312 459 aa25.38■■□□□ 1.65
SHKBP1-221ENST00000599833 NUP98P52948 1817 aa25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 POLRMTO00411 1230 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 NFIXQ14938 502 aa25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 DZIP3Q86Y13 1208 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 TSPYL6Q8N831 410 aa25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 ZNF330Q9Y3S2 320 aaPredicted RBP25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 FANCIQ9NVI1 1328 aa25.37■■□□□ 1.65
SHKBP1-221ENST00000599833 ANXA1P04083 346 aa25.36■■□□□ 1.65
SHKBP1-221ENST00000599833 EIF2S2P20042 333 aaKnown RBP25.36■■□□□ 1.65
SHKBP1-221ENST00000599833 TTLL7Q6ZT98 887 aa25.35■■□□□ 1.65
SHKBP1-221ENST00000599833 MYL6BP14649 208 aa25.34■■□□□ 1.65
SHKBP1-221ENST00000599833 TBC1D9BQ66K14 1250 aa25.34■■□□□ 1.65
SHKBP1-221ENST00000599833 NLGN2Q8NFZ4 835 aa25.34■■□□□ 1.65
SHKBP1-221ENST00000599833 RGL2O15211 777 aa25.33■■□□□ 1.65
SHKBP1-221ENST00000599833 NECTIN2Q92692 538 aa25.33■■□□□ 1.65
SHKBP1-221ENST00000599833 HLFQ16534 295 aa25.32■■□□□ 1.64
SHKBP1-221ENST00000599833 HDGFL1Q5TGJ6 251 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms