RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 KDM6AO15550 1401 aaPredicted RBP28.28■■■□□ 2.12
CCDC47-204ENST00000582252 CEP85Q6P2H3 762 aa28.27■■■□□ 2.12
CCDC47-204ENST00000582252 MEIS3Q99687 375 aa28.27■■■□□ 2.12
CCDC47-204ENST00000582252 GNAI3P08754 354 aa28.26■■■□□ 2.12
CCDC47-204ENST00000582252 BARGINQ6ZT62 677 aa28.26■■■□□ 2.12
CCDC47-204ENST00000582252 NECTIN2Q92692 538 aa28.26■■■□□ 2.12
CCDC47-204ENST00000582252 TNS2Q63HR2 1409 aa28.26■■■□□ 2.11
CCDC47-204ENST00000582252 F6X3S4 739 aa28.26■■■□□ 2.11
CCDC47-204ENST00000582252 MRC1P22897 1456 aa28.25■■■□□ 2.11
CCDC47-204ENST00000582252 MYT1Q01538 1121 aa28.25■■■□□ 2.11
CCDC47-204ENST00000582252 AFF2P51816 1311 aa28.24■■■□□ 2.11
CCDC47-204ENST00000582252 FBXO41Q8TF61 875 aa28.24■■■□□ 2.11
CCDC47-204ENST00000582252 GNAI2P04899 355 aa28.23■■■□□ 2.11
CCDC47-204ENST00000582252 NKX1-1Q15270 411 aaPredicted RBP28.23■■■□□ 2.11
CCDC47-204ENST00000582252 EXOC5O00471 708 aa28.22■■■□□ 2.11
CCDC47-204ENST00000582252 BMP2KLQ5H9B9 411 aa28.22■■■□□ 2.11
CCDC47-204ENST00000582252 EIF2S2P20042 333 aaKnown RBP28.21■■■□□ 2.11
CCDC47-204ENST00000582252 DDX54Q8TDD1 881 aaKnown RBP28.21■■■□□ 2.11
CCDC47-204ENST00000582252 SEC24BO95487 1268 aa28.21■■■□□ 2.11
CCDC47-204ENST00000582252 SLC52A2Q9HAB3 445 aa28.2■■■□□ 2.1
CCDC47-204ENST00000582252 KAT6BQ8WYB5 2073 aa28.19■■■□□ 2.1
CCDC47-204ENST00000582252 DBF4Q9UBU7 674 aaPredicted RBP28.18■■■□□ 2.1
CCDC47-204ENST00000582252 HEG1Q9ULI3 1381 aa28.18■■■□□ 2.1
CCDC47-204ENST00000582252 KCNQ3O43525 872 aa28.18■■■□□ 2.1
CCDC47-204ENST00000582252 DDB1Q16531 1140 aa28.18■■■□□ 2.1
CCDC47-204ENST00000582252 CHPF2Q9P2E5 772 aa28.17■■■□□ 2.1
CCDC47-204ENST00000582252 TOGARAM1Q9Y4F4 1720 aa28.17■■■□□ 2.1
CCDC47-204ENST00000582252 ATRNO75882 1429 aa28.17■■■□□ 2.1
CCDC47-204ENST00000582252 EIF5BO60841 1220 aaKnown RBP28.16■■■□□ 2.1
CCDC47-204ENST00000582252 TBC1D32Q96NH3 1257 aa28.16■■■□□ 2.1
CCDC47-204ENST00000582252 ERVV-2B6SEH9 535 aa28.15■■■□□ 2.1
CCDC47-204ENST00000582252 PHAXQ9H814 394 aaKnown RBP28.15■■■□□ 2.1
CCDC47-204ENST00000582252 TRPC5Q9UL62 973 aaPredicted RBP28.15■■■□□ 2.1
CCDC47-204ENST00000582252 GLI3P10071 1580 aa28.15■■■□□ 2.1
CCDC47-204ENST00000582252 GIGYF1O75420 1035 aaPredicted RBP28.15■■■□□ 2.1
CCDC47-204ENST00000582252 THSD7AQ9UPZ6 1657 aa28.14■■■□□ 2.1
CCDC47-204ENST00000582252 FAM98CQ17RN3 349 aaKnown RBP28.14■■■□□ 2.1
CCDC47-204ENST00000582252 ITGB4P16144 1822 aa28.14■■■□□ 2.09
CCDC47-204ENST00000582252 CABP4P57796 275 aa28.13■■■□□ 2.09
CCDC47-204ENST00000582252 BECN1Q14457 450 aa28.13■■■□□ 2.09
CCDC47-204ENST00000582252 SRCIN1Q9C0H9 1055 aa28.13■■■□□ 2.09
CCDC47-204ENST00000582252 NFATC2IPQ8NCF5 419 aa28.12■■■□□ 2.09
CCDC47-204ENST00000582252 GJD4Q96KN9 370 aaPredicted RBP28.12■■■□□ 2.09
CCDC47-204ENST00000582252 UBTFL1P0CB47 393 aaPredicted RBP28.11■■■□□ 2.09
CCDC47-204ENST00000582252 DNAAF4Q8WXU2 420 aa28.11■■■□□ 2.09
CCDC47-204ENST00000582252 HYPKQ9NX55 129 aa28.09■■■□□ 2.09
CCDC47-204ENST00000582252 ATP8B2P98198 1209 aa28.09■■■□□ 2.09
CCDC47-204ENST00000582252 ZNF790Q6PG37 636 aa28.09■■■□□ 2.09
CCDC47-204ENST00000582252 DOT1LQ8TEK3 1739 aa28.09■■■□□ 2.09
CCDC47-204ENST00000582252 PAPPAQ13219 1627 aa28.08■■■□□ 2.09
CCDC47-204ENST00000582252 MFAP1P55081 439 aaKnown RBP28.08■■■□□ 2.09
CCDC47-204ENST00000582252 PLEKHM2Q8IWE5 1019 aa28.08■■■□□ 2.09
CCDC47-204ENST00000582252 C22orf23Q9BZE7 217 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 USP44Q9H0E7 712 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 UBR2Q8IWV8 1755 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 PI4KAP2A4QPH2 592 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 PI4KAP1Q8N8J0 262 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 HDAC5Q9UQL6 1122 aa28.06■■■□□ 2.08
CCDC47-204ENST00000582252 DDX58O95786 925 aaKnown RBP28.05■■■□□ 2.08
CCDC47-204ENST00000582252 A0A0G2JS52 829 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 BEND3Q5T5X7 828 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 TTC5Q8N0Z6 440 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 QTRT2Q9H974 415 aaKnown RBP28.04■■■□□ 2.08
CCDC47-204ENST00000582252 DDX21Q9NR30 783 aaKnown RBP eCLIP28.04■■■□□ 2.08
CCDC47-204ENST00000582252 LRRFIP2Q9Y608 721 aaKnown RBP28.04■■■□□ 2.08
CCDC47-204ENST00000582252 C5P01031 1676 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 TTC22Q5TAA0 569 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 TMOD3Q9NYL9 352 aa28.04■■■□□ 2.08
CCDC47-204ENST00000582252 CDC45O75419 566 aa28.03■■■□□ 2.08
CCDC47-204ENST00000582252 ZNF772Q68DY9 489 aaPredicted RBP28.03■■■□□ 2.08
CCDC47-204ENST00000582252 MARCH10Q8NA82 808 aaPredicted RBP28.03■■■□□ 2.08
CCDC47-204ENST00000582252 ADCY9O60503 1353 aa28.03■■■□□ 2.08
CCDC47-204ENST00000582252 ALDH1L1O75891 902 aa28.02■■■□□ 2.08
CCDC47-204ENST00000582252 KSR2Q6VAB6 950 aa28.02■■■□□ 2.08
CCDC47-204ENST00000582252 ONECUT3O60422 494 aaPredicted RBP28.01■■■□□ 2.07
CCDC47-204ENST00000582252 SLC39A6Q13433 755 aa28.01■■■□□ 2.07
CCDC47-204ENST00000582252 LRRCC1Q9C099 1032 aa28■■■□□ 2.07
CCDC47-204ENST00000582252 ANXA1P04083 346 aa27.99■■■□□ 2.07
CCDC47-204ENST00000582252 FMNL2Q96PY5 1086 aa27.99■■■□□ 2.07
CCDC47-204ENST00000582252 LAMB4A4D0S4 1761 aa27.99■■■□□ 2.07
CCDC47-204ENST00000582252 APBB1O00213 710 aa27.98■■■□□ 2.07
CCDC47-204ENST00000582252 BCL9O00512 1426 aa27.98■■■□□ 2.07
CCDC47-204ENST00000582252 IBTKQ9P2D0 1353 aaPredicted RBP27.98■■■□□ 2.07
CCDC47-204ENST00000582252 PNMA6EA0A0J9YXQ4 647 aa27.98■■■□□ 2.07
CCDC47-204ENST00000582252 SMARCA5O60264 1052 aaPredicted RBP27.98■■■□□ 2.07
CCDC47-204ENST00000582252 SNRPA1P09661 255 aaKnown RBP27.98■■■□□ 2.07
CCDC47-204ENST00000582252 MAP3K2Q9Y2U5 619 aa27.98■■■□□ 2.07
CCDC47-204ENST00000582252 GSPT1P15170 499 aaKnown RBP27.97■■■□□ 2.07
CCDC47-204ENST00000582252 SLC4A3P48751 1232 aa27.97■■■□□ 2.07
CCDC47-204ENST00000582252 TBC1D9Q6ZT07 1266 aa27.97■■■□□ 2.07
CCDC47-204ENST00000582252 SSH3Q8TE77 659 aa27.97■■■□□ 2.07
CCDC47-204ENST00000582252 OSBPL3Q9H4L5 887 aa27.97■■■□□ 2.07
CCDC47-204ENST00000582252 CASC1Q6TDU7 716 aa27.96■■■□□ 2.07
CCDC47-204ENST00000582252 C16orf71Q8IYS4 520 aaPredicted RBP27.96■■■□□ 2.07
CCDC47-204ENST00000582252 PRAMEF22A3QJZ6 481 aa27.95■■■□□ 2.07
CCDC47-204ENST00000582252 RAB11FIP3O75154 756 aa27.95■■■□□ 2.07
CCDC47-204ENST00000582252 RBM25P49756 843 aaKnown RBP27.95■■■□□ 2.07
CCDC47-204ENST00000582252 PROSER3Q2NL68 480 aa27.95■■■□□ 2.07
CCDC47-204ENST00000582252 PIGBQ92521 554 aa27.95■■■□□ 2.07
CCDC47-204ENST00000582252 ZNF496Q96IT1 587 aaPredicted RBP27.95■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms