RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 USP26Q9BXU7 913 aa12.48□□□□□ -0.41
RNF40-204ENST00000563683 MSH6P52701 1360 aa12.48□□□□□ -0.41
RNF40-204ENST00000563683 PRPF40BQ6NWY9 871 aaKnown RBP12.48□□□□□ -0.41
RNF40-204ENST00000563683 STRN4Q9NRL3 753 aa12.48□□□□□ -0.41
RNF40-204ENST00000563683 DBF4Q9UBU7 674 aaPredicted RBP12.48□□□□□ -0.41
RNF40-204ENST00000563683 SETBP1Q9Y6X0 1596 aa12.48□□□□□ -0.41
RNF40-204ENST00000563683 WDR33Q9C0J8 1336 aaKnown RBP12.48□□□□□ -0.41
RNF40-204ENST00000563683 FLT4P35916 1363 aa12.48□□□□□ -0.41
RNF40-204ENST00000563683 GLRX3O76003 335 aaKnown RBP12.47□□□□□ -0.41
RNF40-204ENST00000563683 APPP05067 770 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 CABP4P57796 275 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 ZGPATQ8N5A5 531 aaKnown RBP12.47□□□□□ -0.41
RNF40-204ENST00000563683 MAP3K2Q9Y2U5 619 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 KIF3AQ9Y496 699 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 GOLGA6L6A8MZA4 724 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 RAB11FIP3O75154 756 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 PSMA5P28066 241 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 WASHC4Q2M389 1173 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 RHPN1Q8TCX5 695 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 GTPBP4Q9BZE4 634 aaKnown RBP12.47□□□□□ -0.41
RNF40-204ENST00000563683 TMEM63CQ9P1W3 806 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 ATP8B2P98198 1209 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 FERMT3Q86UX7 667 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 FBXW7Q969H0 707 aa12.47□□□□□ -0.41
RNF40-204ENST00000563683 TMX3Q96JJ7 454 aa12.46□□□□□ -0.41
RNF40-204ENST00000563683 NRXN1Q9ULB1 1477 aa12.46□□□□□ -0.41
RNF40-204ENST00000563683 CEBPZQ03701 1054 aaKnown RBP12.46□□□□□ -0.41
RNF40-204ENST00000563683 CCDC83Q8IWF9 413 aa12.46□□□□□ -0.41
RNF40-204ENST00000563683 CCDC85AQ96PX6 553 aaPredicted RBP12.46□□□□□ -0.41
RNF40-204ENST00000563683 PDRG1Q9NUG6 133 aa12.46□□□□□ -0.41
RNF40-204ENST00000563683 PTCD1O75127 700 aaKnown RBP12.46□□□□□ -0.42
RNF40-204ENST00000563683 HOXC9P31274 260 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 UVSSAQ2YD98 709 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 SLC39A6Q13433 755 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 PKP1Q13835 747 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 AMOTQ4VCS5 1084 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 LARP1BQ659C4 914 aaKnown RBP12.45□□□□□ -0.42
RNF40-204ENST00000563683 TOM1L2Q6ZVM7 507 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 MYD88Q99836 296 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 PRDM10Q9NQV6 1147 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 PIK3R4Q99570 1358 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 ABCC3O15438 1527 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 GSPT1P15170 499 aaKnown RBP12.45□□□□□ -0.42
RNF40-204ENST00000563683 ESYT1Q9BSJ8 1104 aa12.45□□□□□ -0.42
RNF40-204ENST00000563683 NRDCO43847 1150 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 BLOC1S2Q6QNY1 142 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.44□□□□□ -0.42
RNF40-204ENST00000563683 DEPDC5O75140 1603 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 PNMA6EA0A0J9YXQ4 647 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 BECN2A8MW95 431 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 PIP4K2AP48426 406 aaPredicted RBP12.44□□□□□ -0.42
RNF40-204ENST00000563683 ANKRD24Q8TF21 1146 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 ABCC4O15439 1325 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 CPLX1O14810 134 aa12.44□□□□□ -0.42
RNF40-204ENST00000563683 ZHX1Q9UKY1 873 aaPredicted RBP12.44□□□□□ -0.42
RNF40-204ENST00000563683 FAM177BA6PVY3 158 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 GOLGA6L19H0YKK7 550 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 KDM4AO75164 1064 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 KIF20AO95235 890 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 PIBF1Q8WXW3 757 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 PA2G4Q9UQ80 394 aaKnown RBP12.43□□□□□ -0.42
RNF40-204ENST00000563683 PTCH1Q13635 1447 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 HIP1O00291 1037 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 KRT28Q7Z3Y7 464 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 SIRT2Q8IXJ6 389 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 PRDM11Q9NQV5 511 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 TBX22Q9Y458 520 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 PRR36Q9H6K5 1346 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 CHRNA2Q15822 529 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 LGR6Q9HBX8 967 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 ARAP3Q8WWN8 1544 aa12.43□□□□□ -0.42
RNF40-204ENST00000563683 PLEKHG3A1L390 1219 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 ATP5J2-PTCD1G3V325 749 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 GTF2F1P35269 517 aaKnown RBP eCLIP12.42□□□□□ -0.42
RNF40-204ENST00000563683 ECHDC1Q9NTX5 307 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 QRICH2Q9H0J4 1663 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 GTF2E1P29083 439 aaPredicted RBP12.42□□□□□ -0.42
RNF40-204ENST00000563683 CWF19L2Q2TBE0 894 aaKnown RBP12.42□□□□□ -0.42
RNF40-204ENST00000563683 LARP1Q6PKG0 1096 aaKnown RBP12.42□□□□□ -0.42
RNF40-204ENST00000563683 NOLC1Q14978 699 aaKnown RBP eCLIP12.42□□□□□ -0.42
RNF40-204ENST00000563683 ZDHHC9Q9Y397 364 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 KIF24Q5T7B8 1368 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 DTNBO60941 627 aa12.42□□□□□ -0.42
RNF40-204ENST00000563683 LETM1O95202 739 aaPredicted RBP12.42□□□□□ -0.42
RNF40-204ENST00000563683 VWDEQ8N2E2 1590 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 HECW2Q9P2P5 1572 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 INO80Q9ULG1 1556 aaPredicted RBP12.41□□□□□ -0.42
RNF40-204ENST00000563683 ZSCAN20P17040 1043 aaPredicted RBP12.41□□□□□ -0.42
RNF40-204ENST00000563683 PDCP20941 246 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 TCEANC2Q96MN5 208 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 TMEM2Q9UHN6 1383 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 FKBP4Q02790 459 aaKnown RBP eCLIP12.41□□□□□ -0.42
RNF40-204ENST00000563683 DDX11Q96FC9 970 aa12.41□□□□□ -0.42
RNF40-204ENST00000563683 AK9Q5TCS8 1911 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 LRRFIP1Q32MZ4 808 aaKnown RBP12.4□□□□□ -0.42
RNF40-204ENST00000563683 HYPKQ9NX55 129 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 LIMCH1Q9UPQ0 1083 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 CHMLP26374 656 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 SPC24Q8NBT2 197 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 BCL11BQ9C0K0 894 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms