RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 KDM3BQ7LBC6 1761 aa11.26□□□□□ -0.61
UBR1-204ENST00000563239 PRAMEF22A3QJZ6 481 aa11.25□□□□□ -0.61
UBR1-204ENST00000563239 PHF14O94880 888 aa11.25□□□□□ -0.61
UBR1-204ENST00000563239 FLAD1Q8NFF5 587 aa11.25□□□□□ -0.61
UBR1-204ENST00000563239 FMNL2Q96PY5 1086 aa11.25□□□□□ -0.61
UBR1-204ENST00000563239 EIF4A1P60842 406 aaKnown RBP11.24□□□□□ -0.61
UBR1-204ENST00000563239 LMOD3Q0VAK6 560 aa11.24□□□□□ -0.61
UBR1-204ENST00000563239 ARHGEF1Q92888 912 aaKnown RBP11.24□□□□□ -0.61
UBR1-204ENST00000563239 CCDC87Q9NVE4 849 aa11.24□□□□□ -0.61
UBR1-204ENST00000563239 ZBTB1Q9Y2K1 713 aa11.24□□□□□ -0.61
UBR1-204ENST00000563239 RTCBQ9Y3I0 505 aaKnown RBP11.24□□□□□ -0.61
UBR1-204ENST00000563239 CHL1O00533 1208 aa11.23□□□□□ -0.61
UBR1-204ENST00000563239 TRAPPC3LQ5T215 181 aa11.23□□□□□ -0.61
UBR1-204ENST00000563239 MSL1Q68DK7 614 aa11.23□□□□□ -0.61
UBR1-204ENST00000563239 USP16Q9Y5T5 823 aa11.23□□□□□ -0.61
UBR1-204ENST00000563239 SOS1Q07889 1333 aaPredicted RBP11.23□□□□□ -0.61
UBR1-204ENST00000563239 A1BGP04217 495 aa11.22□□□□□ -0.61
UBR1-204ENST00000563239 SNRPA1P09661 255 aaKnown RBP11.22□□□□□ -0.61
UBR1-204ENST00000563239 ZNF853P0CG23 659 aa11.22□□□□□ -0.61
UBR1-204ENST00000563239 TEX13AQ9BXU3 409 aaPredicted RBP11.22□□□□□ -0.61
UBR1-204ENST00000563239 BABAM1Q9NWV8 329 aa11.22□□□□□ -0.61
UBR1-204ENST00000563239 C4AP0C0L4 1744 aa11.21□□□□□ -0.61
UBR1-204ENST00000563239 GIGYF1O75420 1035 aaPredicted RBP11.21□□□□□ -0.61
UBR1-204ENST00000563239 STARD3NLO95772 234 aa11.21□□□□□ -0.61
UBR1-204ENST00000563239 EIF5P55010 431 aaKnown RBP11.21□□□□□ -0.61
UBR1-204ENST00000563239 TSPYL4Q9UJ04 414 aa11.21□□□□□ -0.61
UBR1-204ENST00000563239 NBPF26B4DH59 902 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 CCER2I3L3R5 266 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 GYS1P13807 737 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 CANXP27824 592 aaKnown RBP11.2□□□□□ -0.62
UBR1-204ENST00000563239 CCDC27Q2M243 656 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 DIEXFQ68CQ4 756 aaKnown RBP11.2□□□□□ -0.62
UBR1-204ENST00000563239 NBPF10Q6P3W6 841 aaKnown RBP11.2□□□□□ -0.62
UBR1-204ENST00000563239 FAM9BQ8IZU0 186 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 NBPF15Q8N660 670 aa11.2□□□□□ -0.62
UBR1-204ENST00000563239 SRP68Q9UHB9 627 aaKnown RBP11.2□□□□□ -0.62
UBR1-204ENST00000563239 COL15A1P39059 1388 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 USP42Q9H9J4 1324 aaKnown RBP11.19□□□□□ -0.62
UBR1-204ENST00000563239 RFC4P35249 363 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 PIP4K2AP48426 406 aaPredicted RBP11.19□□□□□ -0.62
UBR1-204ENST00000563239 KRT24Q2M2I5 525 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 MIER1Q8N108 512 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 CFAP44Q96MT7 982 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 ARXQ96QS3 562 aa11.19□□□□□ -0.62
UBR1-204ENST00000563239 IL6STP40189 918 aaPredicted RBP11.18□□□□□ -0.62
UBR1-204ENST00000563239 WWC1Q8IX03 1113 aa11.18□□□□□ -0.62
UBR1-204ENST00000563239 BCL2L12Q9HB09 334 aa11.18□□□□□ -0.62
UBR1-204ENST00000563239 MBIPQ9NS73 344 aa11.18□□□□□ -0.62
UBR1-204ENST00000563239 NARFQ9UHQ1 456 aa11.18□□□□□ -0.62
UBR1-204ENST00000563239 LAS1LQ9Y4W2 734 aaKnown RBP11.18□□□□□ -0.62
UBR1-204ENST00000563239 LAMB4A4D0S4 1761 aa11.18□□□□□ -0.62
UBR1-204ENST00000563239 POLD1P28340 1107 aa11.17□□□□□ -0.62
UBR1-204ENST00000563239 FKBP8Q14318 412 aa11.17□□□□□ -0.62
UBR1-204ENST00000563239 USPL1Q5W0Q7 1092 aa11.17□□□□□ -0.62
UBR1-204ENST00000563239 FHDC1Q9C0D6 1143 aaPredicted RBP11.17□□□□□ -0.62
UBR1-204ENST00000563239 IFT57Q9NWB7 429 aa11.17□□□□□ -0.62
UBR1-204ENST00000563239 PPP1R1BQ9UD71 204 aaPredicted RBP11.17□□□□□ -0.62
UBR1-204ENST00000563239 MMP10P09238 476 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 TM4SF1P30408 202 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 PDIA6Q15084 440 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 LRP10Q7Z4F1 713 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 NLGN1Q8N2Q7 840 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 SYT17Q9BSW7 474 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 TBC1D2BQ9UPU7 963 aa11.16□□□□□ -0.62
UBR1-204ENST00000563239 A0A087WZG4 1122 aa11.15□□□□□ -0.62
UBR1-204ENST00000563239 GNAI1P63096 354 aa11.15□□□□□ -0.62
UBR1-204ENST00000563239 DDR1Q08345 913 aa11.15□□□□□ -0.62
UBR1-204ENST00000563239 SALL2Q9Y467 1007 aaPredicted RBP11.15□□□□□ -0.62
UBR1-204ENST00000563239 ZPR1O75312 459 aa11.14□□□□□ -0.63
UBR1-204ENST00000563239 CAMTA2O94983 1202 aa11.14□□□□□ -0.63
UBR1-204ENST00000563239 CALD1Q05682 793 aaKnown RBP11.14□□□□□ -0.63
UBR1-204ENST00000563239 C8orf58Q8NAV2 365 aa11.14□□□□□ -0.63
UBR1-204ENST00000563239 SCN7AQ01118 1682 aa11.14□□□□□ -0.63
UBR1-204ENST00000563239 IL16Q14005 1332 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 ZNF521Q96K83 1311 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 EIF2S2P20042 333 aaKnown RBP11.13□□□□□ -0.63
UBR1-204ENST00000563239 NFIXQ14938 502 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 PROSER3Q2NL68 480 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 DUSP27Q5VZP5 1158 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 WDR63Q8IWG1 891 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 NLGN2Q8NFZ4 835 aa11.13□□□□□ -0.63
UBR1-204ENST00000563239 TSR2Q969E8 191 aaKnown RBP11.13□□□□□ -0.63
UBR1-204ENST00000563239 SPINK5Q9NQ38 1064 aaPredicted RBP11.13□□□□□ -0.63
UBR1-204ENST00000563239 ZNF330Q9Y3S2 320 aaPredicted RBP11.13□□□□□ -0.63
UBR1-204ENST00000563239 GOLGB1Q14789 3259 aaKnown RBP11.13□□□□□ -0.63
UBR1-204ENST00000563239 ERBB4Q15303 1308 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 POLRMTO00411 1230 aaKnown RBP11.12□□□□□ -0.63
UBR1-204ENST00000563239 ANXA1P04083 346 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 HOXB7P09629 217 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 TTLL7Q6ZT98 887 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 DZIP3Q86Y13 1208 aaKnown RBP11.12□□□□□ -0.63
UBR1-204ENST00000563239 NECTIN2Q92692 538 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 BCORQ6W2J9 1755 aa11.12□□□□□ -0.63
UBR1-204ENST00000563239 MYL6BP14649 208 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 HLFQ16534 295 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 TBC1D9BQ66K14 1250 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 NGEFQ8N5V2 710 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 TSPYL6Q8N831 410 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 CD2APQ9Y5K6 639 aa11.11□□□□□ -0.63
UBR1-204ENST00000563239 C10orf71Q711Q0 1435 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms