RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PITPNM1O00562 1244 aa15.75■□□□□ 0.11
USP3-220ENST00000561381 FKBP8Q14318 412 aa15.75■□□□□ 0.11
USP3-220ENST00000561381 MRC1P22897 1456 aa15.75■□□□□ 0.11
USP3-220ENST00000561381 USP42Q9H9J4 1324 aaKnown RBP15.74■□□□□ 0.11
USP3-220ENST00000561381 DPEP1P16444 411 aa15.74■□□□□ 0.11
USP3-220ENST00000561381 TGFB2P61812 414 aa15.74■□□□□ 0.11
USP3-220ENST00000561381 CCDC87Q9NVE4 849 aa15.74■□□□□ 0.11
USP3-220ENST00000561381 PARP3Q9Y6F1 533 aa15.74■□□□□ 0.11
USP3-220ENST00000561381 VIRMAQ69YN4 1812 aaKnown RBP15.73■□□□□ 0.11
USP3-220ENST00000561381 COL3A1P02461 1466 aaPredicted RBP15.73■□□□□ 0.11
USP3-220ENST00000561381 SPDYE2BA6NHP3 402 aa15.73■□□□□ 0.11
USP3-220ENST00000561381 SPDYE6P0CI01 402 aa15.73■□□□□ 0.11
USP3-220ENST00000561381 DDR1Q08345 913 aa15.73■□□□□ 0.11
USP3-220ENST00000561381 SPDYE2Q495Y8 402 aa15.73■□□□□ 0.11
USP3-220ENST00000561381 GPBP1L1Q9HC44 474 aaPredicted RBP15.73■□□□□ 0.11
USP3-220ENST00000561381 BCS1LQ9Y276 419 aa15.73■□□□□ 0.11
USP3-220ENST00000561381 ADAMTS7Q9UKP4 1686 aa15.72■□□□□ 0.11
USP3-220ENST00000561381 KCPQ6ZWJ8 1503 aa15.72■□□□□ 0.11
USP3-220ENST00000561381 NPC1L1Q9UHC9 1359 aa15.72■□□□□ 0.11
USP3-220ENST00000561381 U2SURPO15042 1029 aaKnown RBP15.71■□□□□ 0.11
USP3-220ENST00000561381 CYP19A1P11511 503 aaPredicted RBP15.71■□□□□ 0.11
USP3-220ENST00000561381 KCNA3P22001 575 aa15.71■□□□□ 0.11
USP3-220ENST00000561381 SP7Q8TDD2 431 aaPredicted RBP15.71■□□□□ 0.11
USP3-220ENST00000561381 SOS1Q07889 1333 aaPredicted RBP15.7■□□□□ 0.1
USP3-220ENST00000561381 USPL1Q5W0Q7 1092 aa15.7■□□□□ 0.1
USP3-220ENST00000561381 FCHSD2O94868 740 aa15.69■□□□□ 0.1
USP3-220ENST00000561381 MKRN4PQ13434 485 aaPredicted RBP15.69■□□□□ 0.1
USP3-220ENST00000561381 ZBTB1Q9Y2K1 713 aa15.69■□□□□ 0.1
USP3-220ENST00000561381 BRCA1P38398 1863 aaKnown RBP15.69■□□□□ 0.1
USP3-220ENST00000561381 POLRMTO00411 1230 aaKnown RBP15.68■□□□□ 0.1
USP3-220ENST00000561381 ZPR1O75312 459 aa15.68■□□□□ 0.1
USP3-220ENST00000561381 TM4SF1P30408 202 aa15.68■□□□□ 0.1
USP3-220ENST00000561381 ARHGAP27Q6ZUM4 889 aa15.68■□□□□ 0.1
USP3-220ENST00000561381 IL17REQ8NFR9 667 aa15.68■□□□□ 0.1
USP3-220ENST00000561381 CHRNA5P30532 468 aa15.67■□□□□ 0.1
USP3-220ENST00000561381 COL15A1P39059 1388 aa15.66■□□□□ 0.1
USP3-220ENST00000561381 UBR2Q8IWV8 1755 aa15.66■□□□□ 0.1
USP3-220ENST00000561381 GNAT3A8MTJ3 354 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 KIF3CO14782 793 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 CANXP27824 592 aaKnown RBP15.65■□□□□ 0.1
USP3-220ENST00000561381 NFIXQ14938 502 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 VSIG10Q8N0Z9 540 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 GAS2L2Q8NHY3 880 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 ZNF496Q96IT1 587 aaPredicted RBP15.65■□□□□ 0.1
USP3-220ENST00000561381 PHACTR3Q96KR7 559 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 BCL2L12Q9HB09 334 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 PIM2Q9P1W9 311 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 NARFQ9UHQ1 456 aa15.65■□□□□ 0.1
USP3-220ENST00000561381 PRKAR2BP31323 418 aa15.64■□□□□ 0.09
USP3-220ENST00000561381 FXR2P51116 673 aaKnown RBP eCLIP15.64■□□□□ 0.09
USP3-220ENST00000561381 TEFQ10587 303 aa15.64■□□□□ 0.09
USP3-220ENST00000561381 TTC5Q8N0Z6 440 aa15.64■□□□□ 0.09
USP3-220ENST00000561381 DALRD3Q5D0E6 543 aaKnown RBP15.63■□□□□ 0.09
USP3-220ENST00000561381 ZNF790Q6PG37 636 aa15.63■□□□□ 0.09
USP3-220ENST00000561381 RSPH6AQ9H0K4 717 aa15.63■□□□□ 0.09
USP3-220ENST00000561381 AFDNP55196 1824 aaKnown RBP15.62■□□□□ 0.09
USP3-220ENST00000561381 ARFGEF1Q9Y6D6 1849 aa15.62■□□□□ 0.09
USP3-220ENST00000561381 KCNQ3O43525 872 aa15.62■□□□□ 0.09
USP3-220ENST00000561381 C9orf131Q5VYM1 1079 aa15.62■□□□□ 0.09
USP3-220ENST00000561381 SIPA1L3O60292 1781 aaPredicted RBP15.62■□□□□ 0.09
USP3-220ENST00000561381 HEG1Q9ULI3 1381 aa15.62■□□□□ 0.09
USP3-220ENST00000561381 STARD3NLO95772 234 aa15.61■□□□□ 0.09
USP3-220ENST00000561381 SERPINB2P05120 415 aa15.61■□□□□ 0.09
USP3-220ENST00000561381 PPP2R1AP30153 589 aa15.61■□□□□ 0.09
USP3-220ENST00000561381 EIF5P55010 431 aaKnown RBP15.61■□□□□ 0.09
USP3-220ENST00000561381 CFAP53Q96M91 514 aa15.61■□□□□ 0.09
USP3-220ENST00000561381 CEMIPQ8WUJ3 1361 aa15.61■□□□□ 0.09
USP3-220ENST00000561381 BICDL1Q6ZP65 573 aa15.6■□□□□ 0.09
USP3-220ENST00000561381 NMRK2Q9NPI5 230 aa15.6■□□□□ 0.09
USP3-220ENST00000561381 NRXN2Q9P2S2 1712 aa15.6■□□□□ 0.09
USP3-220ENST00000561381 U2AF1L5P0DN76 240 aaPredicted RBP15.59■□□□□ 0.09
USP3-220ENST00000561381 HSPA6P17066 643 aa15.59■□□□□ 0.09
USP3-220ENST00000561381 U2AF1Q01081 240 aaKnown RBP eCLIP15.59■□□□□ 0.09
USP3-220ENST00000561381 ZNF330Q9Y3S2 320 aaPredicted RBP15.59■□□□□ 0.09
USP3-220ENST00000561381 CEP350Q5VT06 3117 aa15.59■□□□□ 0.09
USP3-220ENST00000561381 CARMIL3Q8ND23 1372 aa15.59■□□□□ 0.09
USP3-220ENST00000561381 A1BGP04217 495 aa15.58■□□□□ 0.08
USP3-220ENST00000561381 TBC1D9BQ66K14 1250 aa15.58■□□□□ 0.08
USP3-220ENST00000561381 TBC1D2BQ9UPU7 963 aa15.58■□□□□ 0.08
USP3-220ENST00000561381 NUDCQ9Y266 331 aa15.58■□□□□ 0.08
USP3-220ENST00000561381 A0A087WZG4 1122 aa15.57■□□□□ 0.08
USP3-220ENST00000561381 BTBD11A6QL63 1104 aa15.57■□□□□ 0.08
USP3-220ENST00000561381 MCM10Q7L590 875 aa15.57■□□□□ 0.08
USP3-220ENST00000561381 FMNL2Q96PY5 1086 aa15.57■□□□□ 0.08
USP3-220ENST00000561381 TEX13AQ9BXU3 409 aaPredicted RBP15.57■□□□□ 0.08
USP3-220ENST00000561381 RNF181Q9P0P0 153 aa15.57■□□□□ 0.08
USP3-220ENST00000561381 PRAMEF22A3QJZ6 481 aa15.56■□□□□ 0.08
USP3-220ENST00000561381 PIP4K2AP48426 406 aaPredicted RBP15.56■□□□□ 0.08
USP3-220ENST00000561381 RASSF7Q02833 373 aa15.56■□□□□ 0.08
USP3-220ENST00000561381 DCTN1Q14203 1278 aa15.56■□□□□ 0.08
USP3-220ENST00000561381 C2CD5Q86YS7 1000 aa15.56■□□□□ 0.08
USP3-220ENST00000561381 CCDC24Q8N4L8 307 aa15.56■□□□□ 0.08
USP3-220ENST00000561381 SBF1O95248 1867 aa15.55■□□□□ 0.08
USP3-220ENST00000561381 HAX1O00165 279 aa15.55■□□□□ 0.08
USP3-220ENST00000561381 IL6STP40189 918 aaPredicted RBP15.55■□□□□ 0.08
USP3-220ENST00000561381 USP16Q9Y5T5 823 aa15.55■□□□□ 0.08
USP3-220ENST00000561381 SCN7AQ01118 1682 aa15.54■□□□□ 0.08
USP3-220ENST00000561381 TOMM70O94826 608 aa15.54■□□□□ 0.08
USP3-220ENST00000561381 CAMTA2O94983 1202 aa15.54■□□□□ 0.08
USP3-220ENST00000561381 PRELPP51888 382 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms