RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 CC2D1BQ5T0F9 858 aaKnown RBP9.31□□□□□ -0.92
SPG11-224ENST00000561268 RC3H1Q5TC82 1133 aaKnown RBP9.31□□□□□ -0.92
SPG11-224ENST00000561268 PXDNLA1KZ92 1463 aa9.31□□□□□ -0.92
SPG11-224ENST00000561268 CCDC88AQ3V6T2 1871 aa9.31□□□□□ -0.92
SPG11-224ENST00000561268 DICER1Q9UPY3 1922 aaKnown RBP9.31□□□□□ -0.92
SPG11-224ENST00000561268 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.3□□□□□ -0.92
SPG11-224ENST00000561268 POLD1P28340 1107 aa9.3□□□□□ -0.92
SPG11-224ENST00000561268 AK7Q96M32 723 aa9.3□□□□□ -0.92
SPG11-224ENST00000561268 ANKRD36CQ5JPF3 1778 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 NUP98P52948 1817 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 ADCY9O60503 1353 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 ATP6V1AP38606 617 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 C1orf141Q5JVX7 400 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 SLC52A2Q9HAB3 445 aa9.29□□□□□ -0.92
SPG11-224ENST00000561268 TIAM2Q8IVF5 1701 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 FER1L6Q2WGJ9 1857 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 GNPATO15228 680 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 RNMTO43148 476 aaKnown RBP9.28□□□□□ -0.92
SPG11-224ENST00000561268 NLGN2Q8NFZ4 835 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 RSPH6AQ9H0K4 717 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 CD2APQ9Y5K6 639 aa9.28□□□□□ -0.92
SPG11-224ENST00000561268 HMOX1P09601 288 aa9.27□□□□□ -0.93
SPG11-224ENST00000561268 CABP4P57796 275 aa9.27□□□□□ -0.93
SPG11-224ENST00000561268 MTHFSDQ2M296 383 aaKnown RBP9.27□□□□□ -0.93
SPG11-224ENST00000561268 MSL1Q68DK7 614 aa9.27□□□□□ -0.93
SPG11-224ENST00000561268 DCBLD2Q96PD2 775 aa9.27□□□□□ -0.93
SPG11-224ENST00000561268 TNRC6CQ9HCJ0 1690 aaKnown RBP9.26□□□□□ -0.93
SPG11-224ENST00000561268 RPS6KA4O75676 772 aa9.26□□□□□ -0.93
SPG11-224ENST00000561268 YY1P25490 414 aa9.26□□□□□ -0.93
SPG11-224ENST00000561268 PPP2R1AP30153 589 aa9.26□□□□□ -0.93
SPG11-224ENST00000561268 NFATC2IPQ8NCF5 419 aa9.26□□□□□ -0.93
SPG11-224ENST00000561268 SOS1Q07889 1333 aaPredicted RBP9.26□□□□□ -0.93
SPG11-224ENST00000561268 USP42Q9H9J4 1324 aaKnown RBP9.26□□□□□ -0.93
SPG11-224ENST00000561268 COL15A1P39059 1388 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 PHF14O94880 888 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 YBX3P16989 372 aaKnown RBP eCLIP9.25□□□□□ -0.93
SPG11-224ENST00000561268 CRKLP46109 303 aaKnown RBP9.25□□□□□ -0.93
SPG11-224ENST00000561268 SMIM5Q71RC9 77 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 VSIG10Q8N0Z9 540 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 GAS2L2Q8NHY3 880 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 LGR6Q9HBX8 967 aa9.25□□□□□ -0.93
SPG11-224ENST00000561268 RTCBQ9Y3I0 505 aaKnown RBP9.25□□□□□ -0.93
SPG11-224ENST00000561268 HEG1Q9ULI3 1381 aa9.24□□□□□ -0.93
SPG11-224ENST00000561268 GYS1P13807 737 aa9.24□□□□□ -0.93
SPG11-224ENST00000561268 INTS5Q6P9B9 1019 aaKnown RBP9.24□□□□□ -0.93
SPG11-224ENST00000561268 LAMB2P55268 1798 aa9.23□□□□□ -0.93
SPG11-224ENST00000561268 CYP19A1P11511 503 aaPredicted RBP9.23□□□□□ -0.93
SPG11-224ENST00000561268 CLCN6P51797 869 aa9.23□□□□□ -0.93
SPG11-224ENST00000561268 IL17REQ8NFR9 667 aa9.23□□□□□ -0.93
SPG11-224ENST00000561268 ARHGEF1Q92888 912 aaKnown RBP9.23□□□□□ -0.93
SPG11-224ENST00000561268 CFAP53Q96M91 514 aa9.23□□□□□ -0.93
SPG11-224ENST00000561268 GNAT3A8MTJ3 354 aa9.22□□□□□ -0.93
SPG11-224ENST00000561268 PTCD1O75127 700 aaKnown RBP9.22□□□□□ -0.93
SPG11-224ENST00000561268 MMP10P09238 476 aa9.22□□□□□ -0.93
SPG11-224ENST00000561268 PRKAR2BP31323 418 aa9.22□□□□□ -0.93
SPG11-224ENST00000561268 DNAJC10Q8IXB1 793 aa9.22□□□□□ -0.93
SPG11-224ENST00000561268 ZNF784Q8NCA9 323 aaPredicted RBP9.22□□□□□ -0.93
SPG11-224ENST00000561268 CCDC87Q9NVE4 849 aa9.22□□□□□ -0.93
SPG11-224ENST00000561268 U2SURPO15042 1029 aaKnown RBP9.21□□□□□ -0.94
SPG11-224ENST00000561268 FCHSD2O94868 740 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 SLC39A6Q13433 755 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 TRAPPC3LQ5T215 181 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 ZNF790Q6PG37 636 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 NLGN1Q8N2Q7 840 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 PHACTR3Q96KR7 559 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 ZBTB1Q9Y2K1 713 aa9.21□□□□□ -0.94
SPG11-224ENST00000561268 GRIN3BO60391 1043 aa9.2□□□□□ -0.94
SPG11-224ENST00000561268 DDR1Q08345 913 aa9.2□□□□□ -0.94
SPG11-224ENST00000561268 ZNF496Q96IT1 587 aaPredicted RBP9.2□□□□□ -0.94
SPG11-224ENST00000561268 GTF3C3Q9Y5Q9 886 aa9.2□□□□□ -0.94
SPG11-224ENST00000561268 ATP10DQ9P241 1426 aa9.2□□□□□ -0.94
SPG11-224ENST00000561268 SLX4Q8IY92 1834 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 CACNA1FO60840 1977 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 HTATSF1O43719 755 aaKnown RBP9.19□□□□□ -0.94
SPG11-224ENST00000561268 RFC4P35249 363 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 TGFB2P61812 414 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 GPR162Q16538 588 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 KLHL34Q8N239 644 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 ZNF579Q8NAF0 562 aaKnown RBP9.19□□□□□ -0.94
SPG11-224ENST00000561268 PLEKHF1Q96S99 279 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 BCL2L12Q9HB09 334 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 SRP68Q9UHB9 627 aaKnown RBP9.19□□□□□ -0.94
SPG11-224ENST00000561268 NUDCQ9Y266 331 aa9.19□□□□□ -0.94
SPG11-224ENST00000561268 POLRMTO00411 1230 aaKnown RBP9.18□□□□□ -0.94
SPG11-224ENST00000561268 TM4SF1P30408 202 aa9.18□□□□□ -0.94
SPG11-224ENST00000561268 EIF5P55010 431 aaKnown RBP9.18□□□□□ -0.94
SPG11-224ENST00000561268 TEFQ10587 303 aa9.18□□□□□ -0.94
SPG11-224ENST00000561268 FKBP8Q14318 412 aa9.18□□□□□ -0.94
SPG11-224ENST00000561268 CARMIL3Q8ND23 1372 aa9.18□□□□□ -0.94
SPG11-224ENST00000561268 NARFQ9UHQ1 456 aa9.18□□□□□ -0.94
SPG11-224ENST00000561268 RGL2O15211 777 aa9.17□□□□□ -0.94
SPG11-224ENST00000561268 U2AF1L5P0DN76 240 aaPredicted RBP9.17□□□□□ -0.94
SPG11-224ENST00000561268 U2AF1Q01081 240 aaKnown RBP eCLIP9.17□□□□□ -0.94
SPG11-224ENST00000561268 LRRC37AA6NMS7 1700 aa9.17□□□□□ -0.94
SPG11-224ENST00000561268 DDX60Q8IY21 1712 aaKnown RBP9.17□□□□□ -0.94
SPG11-224ENST00000561268 RIC1Q4ADV7 1423 aa9.16□□□□□ -0.94
SPG11-224ENST00000561268 KCNA3P22001 575 aa9.16□□□□□ -0.94
SPG11-224ENST00000561268 IL6STP40189 918 aaPredicted RBP9.16□□□□□ -0.94
SPG11-224ENST00000561268 RALBP1Q15311 655 aa9.16□□□□□ -0.94
SPG11-224ENST00000561268 TTC5Q8N0Z6 440 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms