RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NPM2Q86SE8 214 aaKnown RBP21.06■□□□□ 0.96
LDLR-206ENST00000557958 CHD1LQ86WJ1 897 aa21.06■□□□□ 0.96
LDLR-206ENST00000557958 ANKRD44Q8N8A2 993 aa21.06■□□□□ 0.96
LDLR-206ENST00000557958 IPO9Q96P70 1041 aaKnown RBP21.06■□□□□ 0.96
LDLR-206ENST00000557958 F6X3S4 739 aa21.05■□□□□ 0.96
LDLR-206ENST00000557958 GNAI3P08754 354 aa21.05■□□□□ 0.96
LDLR-206ENST00000557958 GJD4Q96KN9 370 aaPredicted RBP21.05■□□□□ 0.96
LDLR-206ENST00000557958 QTRT2Q9H974 415 aaKnown RBP21.05■□□□□ 0.96
LDLR-206ENST00000557958 TMOD3Q9NYL9 352 aa21.05■□□□□ 0.96
LDLR-206ENST00000557958 SCN11AQ9UI33 1791 aa21.05■□□□□ 0.96
LDLR-206ENST00000557958 HMMRO75330 724 aa21.05■□□□□ 0.96
LDLR-206ENST00000557958 DBF4Q9UBU7 674 aaPredicted RBP21.05■□□□□ 0.96
LDLR-206ENST00000557958 ZBTB47Q9UFB7 747 aaPredicted RBP21.05■□□□□ 0.96
LDLR-206ENST00000557958 TRPC5Q9UL62 973 aaPredicted RBP21.05■□□□□ 0.96
LDLR-206ENST00000557958 HEG1Q9ULI3 1381 aa21.04■□□□□ 0.96
LDLR-206ENST00000557958 MEIS3Q99687 375 aa21.04■□□□□ 0.96
LDLR-206ENST00000557958 ATP10DQ9P241 1426 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 GIGYF1O75420 1035 aaPredicted RBP21.03■□□□□ 0.96
LDLR-206ENST00000557958 SIRT2Q8IXJ6 389 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 MARCH10Q8NA82 808 aaPredicted RBP21.03■□□□□ 0.96
LDLR-206ENST00000557958 MRC1P22897 1456 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 SHANK3Q9BYB0 1731 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 TNS2Q63HR2 1409 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 PRAMEF22A3QJZ6 481 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 ERICH6Q7L0X2 663 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 FBXO41Q8TF61 875 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 ACSBG1Q96GR2 724 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 CHPF2Q9P2E5 772 aa21.03■□□□□ 0.96
LDLR-206ENST00000557958 ANKRD45Q5TZF3 282 aa21.02■□□□□ 0.96
LDLR-206ENST00000557958 CEP85Q6P2H3 762 aa21.02■□□□□ 0.96
LDLR-206ENST00000557958 DDRGK1Q96HY6 314 aa21.02■□□□□ 0.96
LDLR-206ENST00000557958 N4BP2Q86UW6 1770 aaPredicted RBP21.02■□□□□ 0.96
LDLR-206ENST00000557958 GNAI2P04899 355 aa21.01■□□□□ 0.95
LDLR-206ENST00000557958 ZNF496Q96IT1 587 aaPredicted RBP21.01■□□□□ 0.95
LDLR-206ENST00000557958 PTCD1O75127 700 aaKnown RBP21.01■□□□□ 0.95
LDLR-206ENST00000557958 PRIM1P49642 420 aaKnown RBP21.01■□□□□ 0.95
LDLR-206ENST00000557958 LNPKQ9C0E8 428 aa21.01■□□□□ 0.95
LDLR-206ENST00000557958 DCTPP1Q9H773 170 aa21.01■□□□□ 0.95
LDLR-206ENST00000557958 PIGBQ92521 554 aa21■□□□□ 0.95
LDLR-206ENST00000557958 UPF2Q9HAU5 1272 aaKnown RBP21■□□□□ 0.95
LDLR-206ENST00000557958 FMNL2Q96PY5 1086 aa20.98■□□□□ 0.95
LDLR-206ENST00000557958 PHAXQ9H814 394 aaKnown RBP20.98■□□□□ 0.95
LDLR-206ENST00000557958 HYPKQ9NX55 129 aa20.98■□□□□ 0.95
LDLR-206ENST00000557958 WNK3Q9BYP7 1800 aa20.98■□□□□ 0.95
LDLR-206ENST00000557958 FAM182BQ5T319 152 aa20.98■□□□□ 0.95
LDLR-206ENST00000557958 SRCIN1Q9C0H9 1055 aa20.98■□□□□ 0.95
LDLR-206ENST00000557958 ASAP1Q9ULH1 1129 aa20.97■□□□□ 0.95
LDLR-206ENST00000557958 KAT6BQ8WYB5 2073 aa20.97■□□□□ 0.95
LDLR-206ENST00000557958 ANXA1P04083 346 aa20.96■□□□□ 0.95
LDLR-206ENST00000557958 DNAAF4Q8WXU2 420 aa20.96■□□□□ 0.95
LDLR-206ENST00000557958 NOP58Q9Y2X3 529 aaKnown RBP20.96■□□□□ 0.95
LDLR-206ENST00000557958 DDX58O95786 925 aaKnown RBP20.95■□□□□ 0.94
LDLR-206ENST00000557958 SNRPA1P09661 255 aaKnown RBP20.95■□□□□ 0.94
LDLR-206ENST00000557958 UBTFL1P0CB47 393 aaPredicted RBP20.95■□□□□ 0.94
LDLR-206ENST00000557958 SEPT12Q8IYM1 358 aa20.95■□□□□ 0.94
LDLR-206ENST00000557958 RBM42Q9BTD8 480 aaKnown RBP20.95■□□□□ 0.94
LDLR-206ENST00000557958 ATRNO75882 1429 aa20.95■□□□□ 0.94
LDLR-206ENST00000557958 DDX21Q9NR30 783 aaKnown RBP eCLIP20.94■□□□□ 0.94
LDLR-206ENST00000557958 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.94■□□□□ 0.94
LDLR-206ENST00000557958 ATG3Q9NT62 314 aa20.94■□□□□ 0.94
LDLR-206ENST00000557958 HDAC5Q9UQL6 1122 aa20.94■□□□□ 0.94
LDLR-206ENST00000557958 USP16Q9Y5T5 823 aa20.94■□□□□ 0.94
LDLR-206ENST00000557958 PI4KAP2A4QPH2 592 aa20.93■□□□□ 0.94
LDLR-206ENST00000557958 BMP2KLQ5H9B9 411 aa20.93■□□□□ 0.94
LDLR-206ENST00000557958 PI4KAP1Q8N8J0 262 aa20.93■□□□□ 0.94
LDLR-206ENST00000557958 TOGARAM1Q9Y4F4 1720 aa20.93■□□□□ 0.94
LDLR-206ENST00000557958 ZNF772Q68DY9 489 aaPredicted RBP20.92■□□□□ 0.94
LDLR-206ENST00000557958 GLI3P10071 1580 aa20.92■□□□□ 0.94
LDLR-206ENST00000557958 KCNQ2O43526 872 aa20.92■□□□□ 0.94
LDLR-206ENST00000557958 PIP4K2AP48426 406 aaPredicted RBP20.92■□□□□ 0.94
LDLR-206ENST00000557958 MYL6BP14649 208 aa20.91■□□□□ 0.94
LDLR-206ENST00000557958 KSR2Q6VAB6 950 aa20.91■□□□□ 0.94
LDLR-206ENST00000557958 USP44Q9H0E7 712 aa20.91■□□□□ 0.94
LDLR-206ENST00000557958 ALDH1L1O75891 902 aa20.9■□□□□ 0.94
LDLR-206ENST00000557958 BEND3Q5T5X7 828 aa20.9■□□□□ 0.94
LDLR-206ENST00000557958 PROSER3Q2NL68 480 aa20.9■□□□□ 0.94
LDLR-206ENST00000557958 ADCY9O60503 1353 aa20.9■□□□□ 0.94
LDLR-206ENST00000557958 BCL9O00512 1426 aa20.89■□□□□ 0.94
LDLR-206ENST00000557958 EIF5BO60841 1220 aaKnown RBP20.89■□□□□ 0.93
LDLR-206ENST00000557958 ATP8B2P98198 1209 aa20.89■□□□□ 0.93
LDLR-206ENST00000557958 AIMP1Q12904 312 aaKnown RBP20.88■□□□□ 0.93
LDLR-206ENST00000557958 DAXXQ9UER7 740 aaPredicted RBP20.88■□□□□ 0.93
LDLR-206ENST00000557958 LRRFIP2Q9Y608 721 aaKnown RBP20.88■□□□□ 0.93
LDLR-206ENST00000557958 ONECUT3O60422 494 aaPredicted RBP20.88■□□□□ 0.93
LDLR-206ENST00000557958 MAP3K2Q9Y2U5 619 aa20.88■□□□□ 0.93
LDLR-206ENST00000557958 DOT1LQ8TEK3 1739 aa20.86■□□□□ 0.93
LDLR-206ENST00000557958 ITGB4P16144 1822 aa20.86■□□□□ 0.93
LDLR-206ENST00000557958 C5P01031 1676 aa20.86■□□□□ 0.93
LDLR-206ENST00000557958 ERBB4Q15303 1308 aa20.85■□□□□ 0.93
LDLR-206ENST00000557958 RBM6P78332 1123 aaKnown RBP20.85■□□□□ 0.93
LDLR-206ENST00000557958 DNAJC10Q8IXB1 793 aa20.85■□□□□ 0.93
LDLR-206ENST00000557958 LINS1Q8NG48 757 aa20.85■□□□□ 0.93
LDLR-206ENST00000557958 IBTKQ9P2D0 1353 aaPredicted RBP20.85■□□□□ 0.93
LDLR-206ENST00000557958 A1BGP04217 495 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 NEXNQ0ZGT2 675 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 PDIA6Q15084 440 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 PTF1AQ7RTS3 328 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 KCPQ6ZWJ8 1503 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 SEC24BO95487 1268 aa20.84■□□□□ 0.93
LDLR-206ENST00000557958 PLEKHM2Q8IWE5 1019 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms