RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 COL3A1P02461 1466 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-208ENST00000553868 EMILIN1Q9Y6C2 1016 aa19.1■□□□□ 0.65
SHMT2-208ENST00000553868 KDM6AO15550 1401 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-208ENST00000553868 AIDAQ96BJ3 306 aa19.09■□□□□ 0.65
SHMT2-208ENST00000553868 CNTNAP1P78357 1384 aa19.08■□□□□ 0.65
SHMT2-208ENST00000553868 TIAM2Q8IVF5 1701 aa19.08■□□□□ 0.64
SHMT2-208ENST00000553868 RTL1A6NKG5 1358 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 FLT4P35916 1363 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 CCDC88AQ3V6T2 1871 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 ZC3H4Q9UPT8 1303 aaKnown RBP19.07■□□□□ 0.64
SHMT2-208ENST00000553868 POTEIP0CG38 1075 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 POTEJP0CG39 1038 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 RFC4P35249 363 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 DDR1Q08345 913 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 SLC4A9Q96Q91 983 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 PNNQ9H307 717 aaKnown RBP19.07■□□□□ 0.64
SHMT2-208ENST00000553868 ATG3Q9NT62 314 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 TMOD3Q9NYL9 352 aa19.07■□□□□ 0.64
SHMT2-208ENST00000553868 ZBED9Q6R2W3 1325 aa19.06■□□□□ 0.64
SHMT2-208ENST00000553868 CCDC85CA6NKD9 419 aa19.06■□□□□ 0.64
SHMT2-208ENST00000553868 U2AF1L5P0DN76 240 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-208ENST00000553868 LMNB1P20700 586 aa19.06■□□□□ 0.64
SHMT2-208ENST00000553868 U2AF1Q01081 240 aaKnown RBP eCLIP19.06■□□□□ 0.64
SHMT2-208ENST00000553868 HSP90AB2PQ58FF8 381 aa19.06■□□□□ 0.64
SHMT2-208ENST00000553868 U2SURPO15042 1029 aaKnown RBP19.05■□□□□ 0.64
SHMT2-208ENST00000553868 VEGFBP49765 207 aa19.05■□□□□ 0.64
SHMT2-208ENST00000553868 NKX1-1Q15270 411 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-208ENST00000553868 SRP68Q9UHB9 627 aaKnown RBP19.05■□□□□ 0.64
SHMT2-208ENST00000553868 FKBP8Q14318 412 aa19.04■□□□□ 0.64
SHMT2-208ENST00000553868 NGEFQ8N5V2 710 aa19.04■□□□□ 0.64
SHMT2-208ENST00000553868 WBP1LQ9NX94 342 aa19.04■□□□□ 0.64
SHMT2-208ENST00000553868 CHADLQ6NUI6 762 aa19.03■□□□□ 0.64
SHMT2-208ENST00000553868 KDRP35968 1356 aa19.03■□□□□ 0.64
SHMT2-208ENST00000553868 HSPA8P11142 646 aaKnown RBP19.02■□□□□ 0.64
SHMT2-208ENST00000553868 ADRA2BP18089 450 aa19.02■□□□□ 0.64
SHMT2-208ENST00000553868 IL13P35225 146 aa19.02■□□□□ 0.64
SHMT2-208ENST00000553868 RUNDC1Q96C34 613 aa19.02■□□□□ 0.64
SHMT2-208ENST00000553868 MYH14Q7Z406 1995 aaKnown RBP19.02■□□□□ 0.64
SHMT2-208ENST00000553868 RPS6KA4O75676 772 aa19.01■□□□□ 0.63
SHMT2-208ENST00000553868 RGS19P49795 217 aa19.01■□□□□ 0.63
SHMT2-208ENST00000553868 RBM42Q9BTD8 480 aaKnown RBP19.01■□□□□ 0.63
SHMT2-208ENST00000553868 VIRMAQ69YN4 1812 aaKnown RBP19.01■□□□□ 0.63
SHMT2-208ENST00000553868 COL5A3P25940 1745 aaPredicted RBP19■□□□□ 0.63
SHMT2-208ENST00000553868 NEFMP07197 916 aa19■□□□□ 0.63
SHMT2-208ENST00000553868 NFKBIEO00221 500 aa18.99■□□□□ 0.63
SHMT2-208ENST00000553868 EIF4A2Q14240 407 aaKnown RBP18.99■□□□□ 0.63
SHMT2-208ENST00000553868 RC3H1Q5TC82 1133 aaKnown RBP18.99■□□□□ 0.63
SHMT2-208ENST00000553868 CNTNAP4Q9C0A0 1308 aa18.98■□□□□ 0.63
SHMT2-208ENST00000553868 MAPK8IP3Q9UPT6 1336 aa18.98■□□□□ 0.63
SHMT2-208ENST00000553868 POLRMTO00411 1230 aaKnown RBP18.97■□□□□ 0.63
SHMT2-208ENST00000553868 CCDC146Q8IYE0 955 aa18.97■□□□□ 0.63
SHMT2-208ENST00000553868 TNRC18O15417 2968 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-208ENST00000553868 PASKQ96RG2 1323 aa18.97■□□□□ 0.63
SHMT2-208ENST00000553868 DPY19L2Q6NUT2 758 aa18.96■□□□□ 0.63
SHMT2-208ENST00000553868 SPG7Q9UQ90 795 aa18.96■□□□□ 0.63
SHMT2-208ENST00000553868 NCBP3Q53F19 620 aaKnown RBP18.95■□□□□ 0.62
SHMT2-208ENST00000553868 USP42Q9H9J4 1324 aaKnown RBP18.95■□□□□ 0.62
SHMT2-208ENST00000553868 APAF1O14727 1248 aa18.94■□□□□ 0.62
SHMT2-208ENST00000553868 PHKG2P15735 406 aa18.94■□□□□ 0.62
SHMT2-208ENST00000553868 CFAP44Q96MT7 982 aa18.93■□□□□ 0.62
SHMT2-208ENST00000553868 RSPH6AQ9H0K4 717 aa18.93■□□□□ 0.62
SHMT2-208ENST00000553868 TMEM88BA6NKF7 163 aa18.92■□□□□ 0.62
SHMT2-208ENST00000553868 DDNO94850 711 aaPredicted RBP18.92■□□□□ 0.62
SHMT2-208ENST00000553868 TM4SF1P30408 202 aa18.92■□□□□ 0.62
SHMT2-208ENST00000553868 ZNF831Q5JPB2 1677 aa18.92■□□□□ 0.62
SHMT2-208ENST00000553868 AFDNP55196 1824 aaKnown RBP18.91■□□□□ 0.62
SHMT2-208ENST00000553868 PRKAR2BP31323 418 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 ERFEQ4G0M1 354 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 TTLL6Q8N841 843 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 PLEKHF1Q96S99 279 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 PDE4DIPQ5VU43 2346 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 DLEC1Q9Y238 1755 aa18.91■□□□□ 0.62
SHMT2-208ENST00000553868 HMOX1P09601 288 aa18.9■□□□□ 0.62
SHMT2-208ENST00000553868 CRKLP46109 303 aaKnown RBP18.9■□□□□ 0.62
SHMT2-208ENST00000553868 IFNL2Q8IZJ0 200 aa18.9■□□□□ 0.62
SHMT2-208ENST00000553868 ZNF219Q9P2Y4 722 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-208ENST00000553868 NCAPD2Q15021 1401 aa18.9■□□□□ 0.62
SHMT2-208ENST00000553868 SULT6B1Q6IMI4 303 aa18.89■□□□□ 0.61
SHMT2-208ENST00000553868 SALL2Q9Y467 1007 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-208ENST00000553868 DICER1Q9UPY3 1922 aaKnown RBP18.88■□□□□ 0.61
SHMT2-208ENST00000553868 ITGBL1O95965 494 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-208ENST00000553868 EYA1Q99502 592 aa18.88■□□□□ 0.61
SHMT2-208ENST00000553868 PTCD1O75127 700 aaKnown RBP18.87■□□□□ 0.61
SHMT2-208ENST00000553868 CCDC27Q2M243 656 aa18.87■□□□□ 0.61
SHMT2-208ENST00000553868 USPL1Q5W0Q7 1092 aa18.87■□□□□ 0.61
SHMT2-208ENST00000553868 C2CD5Q86YS7 1000 aa18.87■□□□□ 0.61
SHMT2-208ENST00000553868 TSKSQ9UJT2 592 aa18.87■□□□□ 0.61
SHMT2-208ENST00000553868 ADAMTS7Q9UKP4 1686 aa18.87■□□□□ 0.61
SHMT2-208ENST00000553868 CARMIL3Q8ND23 1372 aa18.86■□□□□ 0.61
SHMT2-208ENST00000553868 WDR33Q9C0J8 1336 aaKnown RBP18.86■□□□□ 0.61
SHMT2-208ENST00000553868 TMPOP42166 694 aaKnown RBP18.86■□□□□ 0.61
SHMT2-208ENST00000553868 MAP2K1Q02750 393 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-208ENST00000553868 DEFB115Q30KQ5 88 aa18.86■□□□□ 0.61
SHMT2-208ENST00000553868 LDHDQ86WU2 507 aa18.86■□□□□ 0.61
SHMT2-208ENST00000553868 RASSF10A6NK89 507 aa18.85■□□□□ 0.61
SHMT2-208ENST00000553868 NFIXQ14938 502 aa18.85■□□□□ 0.61
SHMT2-208ENST00000553868 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.85■□□□□ 0.61
SHMT2-208ENST00000553868 ZNF521Q96K83 1311 aa18.84■□□□□ 0.61
SHMT2-208ENST00000553868 C21orf2O43822 256 aa18.84■□□□□ 0.61
SHMT2-208ENST00000553868 GOLGA2Q08379 1002 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms