RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 ATP9BO43861 1147 aa7.62□□□□□ -1.19
ATXN3-220ENST00000553491 TAS1R3Q7RTX0 852 aa7.62□□□□□ -1.19
ATXN3-220ENST00000553491 ZNF295-AS1Q8N0V1 137 aa7.62□□□□□ -1.19
ATXN3-220ENST00000553491 VWA5B2Q8N398 1253 aa7.62□□□□□ -1.19
ATXN3-220ENST00000553491 SLC4A9Q96Q91 983 aa7.62□□□□□ -1.19
ATXN3-220ENST00000553491 ZSCAN10Q96SZ4 725 aaPredicted RBP7.62□□□□□ -1.19
ATXN3-220ENST00000553491 CTTNBP2Q8WZ74 1663 aa7.61□□□□□ -1.19
ATXN3-220ENST00000553491 INSM1Q01101 510 aaPredicted RBP7.61□□□□□ -1.19
ATXN3-220ENST00000553491 DBN1Q16643 649 aa7.61□□□□□ -1.19
ATXN3-220ENST00000553491 PPARGC1BQ86YN6 1023 aaKnown RBP7.61□□□□□ -1.19
ATXN3-220ENST00000553491 NOD1Q9Y239 953 aa7.61□□□□□ -1.19
ATXN3-220ENST00000553491 USP17L3A6NCW0 530 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 USP17L4A6NCW7 530 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 THBS1P07996 1170 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 SMTNP53814 917 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 GTF2IP78347 998 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 MTFR1Q15390 333 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 C4orf17Q53FE4 359 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 RNFT1Q5M7Z0 435 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 USP17L2Q6R6M4 530 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 SV2AQ7L0J3 742 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 USP17L1Q7RTZ2 530 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 TRIM22Q8IYM9 498 aa7.6□□□□□ -1.19
ATXN3-220ENST00000553491 IQSEC3Q9UPP2 1182 aaPredicted RBP7.6□□□□□ -1.19
ATXN3-220ENST00000553491 PRG4Q92954 1404 aaPredicted RBP7.6□□□□□ -1.19
ATXN3-220ENST00000553491 ERCC6L2Q5T890 1561 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 CLDN10P78369 228 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 TLR1Q15399 786 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 ZNF837Q96EG3 531 aaPredicted RBP7.59□□□□□ -1.19
ATXN3-220ENST00000553491 COL25A1Q9BXS0 654 aaPredicted RBP7.59□□□□□ -1.19
ATXN3-220ENST00000553491 TIMMDC1Q9NPL8 285 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 KIAA1024Q9UPX6 916 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 RAPGEF2Q9Y4G8 1499 aa7.59□□□□□ -1.19
ATXN3-220ENST00000553491 CDC14CA4D256 554 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 DKK1O94907 266 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 PHKA2P46019 1235 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 RHBDD1Q8TEB9 315 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 GMCL1Q96IK5 515 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 TFIP11Q9UBB9 837 aaKnown RBP7.58□□□□□ -1.2
ATXN3-220ENST00000553491 SERTAD1Q9UHV2 236 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 MAFBQ9Y5Q3 323 aaPredicted RBP7.58□□□□□ -1.2
ATXN3-220ENST00000553491 USP3Q9Y6I4 520 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 NUP160Q12769 1436 aa7.58□□□□□ -1.2
ATXN3-220ENST00000553491 PALM3A6NDB9 673 aaPredicted RBP7.57□□□□□ -1.2
ATXN3-220ENST00000553491 F11P03951 625 aa7.57□□□□□ -1.2
ATXN3-220ENST00000553491 EPHA4P54764 986 aa7.57□□□□□ -1.2
ATXN3-220ENST00000553491 GAS6Q14393 721 aa7.57□□□□□ -1.2
ATXN3-220ENST00000553491 TMEM214Q6NUQ4 689 aaKnown RBP7.57□□□□□ -1.2
ATXN3-220ENST00000553491 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.57□□□□□ -1.2
ATXN3-220ENST00000553491 GAS2L1Q99501 681 aaPredicted RBP7.57□□□□□ -1.2
ATXN3-220ENST00000553491 ZNF358Q9NW07 568 aa7.57□□□□□ -1.2
ATXN3-220ENST00000553491 SHROOM2Q13796 1616 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 ARAP1Q96P48 1450 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 A6NJY4 79 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 CDK2AP1O14519 115 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 UBAP2LQ14157 1087 aaKnown RBP7.56□□□□□ -1.2
ATXN3-220ENST00000553491 ZSCAN1Q8NBB4 408 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 CNTNAP3BQ96NU0 1288 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 CNTNAP3Q9BZ76 1288 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 PPP1R12CQ9BZL4 782 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 STK17AQ9UEE5 414 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 MKRN1Q9UHC7 482 aaKnown RBP7.56□□□□□ -1.2
ATXN3-220ENST00000553491 KIAA0586Q9BVV6 1533 aa7.56□□□□□ -1.2
ATXN3-220ENST00000553491 IQGAP2Q13576 1575 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 A0A1B0GTH6 734 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 FOXK2Q01167 660 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 GNASQ5JWF2 1037 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 RIPOR1Q6ZS17 1223 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 TRIM50Q86XT4 487 aa7.55□□□□□ -1.2
ATXN3-220ENST00000553491 MSX1P28360 303 aa7.54□□□□□ -1.2
ATXN3-220ENST00000553491 KANK4Q5T7N3 995 aaPredicted RBP7.54□□□□□ -1.2
ATXN3-220ENST00000553491 OGFOD1Q8N543 542 aa7.54□□□□□ -1.2
ATXN3-220ENST00000553491 SCHIP1Q9P0W5 487 aaPredicted RBP7.54□□□□□ -1.2
ATXN3-220ENST00000553491 CARMIL2Q6F5E8 1435 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 H7C1W4 665 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 BACH1O14867 736 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 SLURP2P0DP57 97 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 CCDC102BQ68D86 513 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 SIX5Q8N196 739 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 LARGE2Q8N3Y3 721 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 DNAAF2Q9NVR5 837 aaKnown RBP7.53□□□□□ -1.2
ATXN3-220ENST00000553491 TSPOAP1O95153 1857 aa7.53□□□□□ -1.2
ATXN3-220ENST00000553491 EEA1Q15075 1411 aa7.52□□□□□ -1.2
ATXN3-220ENST00000553491 GPR25O00155 361 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 ATP4AP20648 1035 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 GTF2E1P29083 439 aaPredicted RBP7.52□□□□□ -1.21
ATXN3-220ENST00000553491 ATP1A2P50993 1020 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 CFAP70Q5T0N1 1121 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 TPCN2Q8NHX9 752 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 ZDHHC1Q8WTX9 485 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 GTPBP3Q969Y2 492 aaKnown RBP7.52□□□□□ -1.21
ATXN3-220ENST00000553491 NIFKQ9BYG3 293 aaKnown RBP7.52□□□□□ -1.21
ATXN3-220ENST00000553491 NUCKS1Q9H1E3 243 aaKnown RBP7.52□□□□□ -1.21
ATXN3-220ENST00000553491 CRISPLD1Q9H336 500 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 GPAMQ9HCL2 828 aa7.52□□□□□ -1.21
ATXN3-220ENST00000553491 M0R2N6 131 aa7.51□□□□□ -1.21
ATXN3-220ENST00000553491 PLA2G4AP47712 749 aa7.51□□□□□ -1.21
ATXN3-220ENST00000553491 PSME1Q06323 249 aa7.51□□□□□ -1.21
ATXN3-220ENST00000553491 TNS4Q8IZW8 715 aa7.51□□□□□ -1.21
ATXN3-220ENST00000553491 RUBCNLQ9H714 662 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms