RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ARHGEF10O15013 1369 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 CHGBP05060 677 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 BRPF1P55201 1214 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-215ENST00000552823 AKAP4Q5JQC9 854 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 NEUROD6Q96NK8 337 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 PTCH1Q13635 1447 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 USP31Q70CQ4 1352 aa6.83□□□□□ -1.32
LIMA1-215ENST00000552823 GOLGA6L3A6NEY3 463 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 PRPF40AO75400 957 aaKnown RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 G3BP1Q13283 466 aaKnown RBP eCLIP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 KIAA1211Q6ZU35 1233 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 UBE3BQ7Z3V4 1068 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 KIF13AQ9H1H9 1805 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 REC8O95072 547 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 PIAS4Q8N2W9 510 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 DNAJC2Q99543 621 aaKnown RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 RBM27Q9P2N5 1060 aaKnown RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 RGPD8O14715 1765 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 TECPR2O15040 1411 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 ST18O60284 1047 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 KDM4AO75164 1064 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 GIGYF1O75420 1035 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 A1BGP04217 495 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 RBM25P49756 843 aaKnown RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 SUCLG2Q96I99 432 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 DIAPH3Q9NSV4 1193 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 DBF4Q9UBU7 674 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-215ENST00000552823 KIF20BQ96Q89 1820 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 TMEM94Q12767 1356 aa6.82□□□□□ -1.32
LIMA1-215ENST00000552823 SLFNL1Q499Z3 407 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 CLASRPQ8N2M8 674 aaKnown RBP6.81□□□□□ -1.32
LIMA1-215ENST00000552823 BICC1Q9H694 974 aaKnown RBP6.81□□□□□ -1.32
LIMA1-215ENST00000552823 KIAA0232Q92628 1395 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 BEND3Q5T5X7 828 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 CAVIN1Q6NZI2 390 aaKnown RBP6.81□□□□□ -1.32
LIMA1-215ENST00000552823 GBP4Q96PP9 640 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 TLR7Q9NYK1 1049 aaKnown RBP6.81□□□□□ -1.32
LIMA1-215ENST00000552823 USP32Q8NFA0 1604 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 CHMLP26374 656 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 PLCB2Q00722 1185 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 NEXNQ0ZGT2 675 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 STK3Q13188 491 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 EPHA10Q5JZY3 1008 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 PRPF40BQ6NWY9 871 aaKnown RBP6.81□□□□□ -1.32
LIMA1-215ENST00000552823 RNF214Q8ND24 703 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 ESYT1Q9BSJ8 1104 aa6.81□□□□□ -1.32
LIMA1-215ENST00000552823 DIP2AQ14689 1571 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 NUTM2BA6NNL0 878 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-215ENST00000552823 NUTM2EB1AL46 878 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-215ENST00000552823 ADAMTS2O95450 1211 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 MCCP23508 829 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 GPTP24298 496 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 RABEP1Q15276 862 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 ZNF790Q6PG37 636 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 NUTM2AQ8IVF1 878 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-215ENST00000552823 RGS12O14924 1447 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 ATP10DQ9P241 1426 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 A0A087WZG4 1122 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 GOLGA6L22H0YM25 854 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 AMOTQ4VCS5 1084 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 ZNF594Q96JF6 807 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-215ENST00000552823 SNRKQ9NRH2 765 aa6.8□□□□□ -1.32
LIMA1-215ENST00000552823 UBR1Q8IWV7 1749 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 CYP27B1O15528 508 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 XRCC6P12956 609 aaKnown RBP eCLIP6.79□□□□□ -1.32
LIMA1-215ENST00000552823 KSR2Q6VAB6 950 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 TTLL7Q6ZT98 887 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 TMX3Q96JJ7 454 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 FSD1Q9BTV5 496 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 SSH2Q76I76 1423 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 HTATSF1O43719 755 aaKnown RBP6.79□□□□□ -1.32
LIMA1-215ENST00000552823 DDX58O95786 925 aaKnown RBP6.79□□□□□ -1.32
LIMA1-215ENST00000552823 RASEFQ8IZ41 740 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 NECAB1Q8N987 351 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 KIF1BPQ96EK5 621 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 FAM227BQ96M60 508 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 LRRC2Q9BYS8 371 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 DLG5Q8TDM6 1919 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 NPHP4O75161 1426 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-215ENST00000552823 ZNF335Q9H4Z2 1342 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-215ENST00000552823 PEAK1Q9H792 1746 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 AK9Q5TCS8 1911 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 HSP90AB3PQ58FF7 597 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 ANKRD13DQ6ZTN6 518 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 FERMT3Q86UX7 667 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 GAS2L3Q86XJ1 694 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 IFNL2Q8IZJ0 200 aa6.79□□□□□ -1.32
LIMA1-215ENST00000552823 KDRP35968 1356 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 GRM8O00222 908 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 BAG4O95429 457 aaKnown RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 FGD1P98174 961 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 LARP1Q6PKG0 1096 aaKnown RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 CCDC129Q6ZRS4 1044 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 STK11IPQ8N1F8 1099 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 EAF2Q96CJ1 260 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 ANO8Q9HCE9 1232 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 ERBB3P21860 1342 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 PHKG2P15735 406 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 CASTP20810 708 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms