RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 PRIM1P49642 420 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 FOSBP53539 338 aa16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 RIC3Q7Z5B4 369 aa16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 ANKLE2Q86XL3 938 aa16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 RIMS1Q86UR5 1692 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-209ENST00000548825 AACSQ86V21 672 aa16.57■□□□□ 0.24
PRPF40B-209ENST00000548825 DDIT3P35638 169 aa16.57■□□□□ 0.24
PRPF40B-209ENST00000548825 ZSCAN23Q3MJ62 389 aa16.57■□□□□ 0.24
PRPF40B-209ENST00000548825 PLEKHG1Q9ULL1 1385 aa16.57■□□□□ 0.24
PRPF40B-209ENST00000548825 FIBPO43427 364 aa16.57■□□□□ 0.24
PRPF40B-209ENST00000548825 CLASRPQ8N2M8 674 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 BOLA2Q9H3K6 86 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 SPATA31D1Q6ZQQ2 1576 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 ERBB4Q15303 1308 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 VPS37CA5D8V6 355 aaPredicted RBP16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 PLEKHO1Q53GL0 409 aaPredicted RBP16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 PRPF40BQ6NWY9 871 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 ANKRD24Q8TF21 1146 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 DLG5Q8TDM6 1919 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 ARHGEF10O15013 1369 aa16.56■□□□□ 0.24
PRPF40B-209ENST00000548825 GCP02774 474 aa16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 CASTP20810 708 aaKnown RBP16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 PROSER2Q86WR7 435 aaPredicted RBP16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 STK3Q13188 491 aa16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 MSNP26038 577 aaKnown RBP16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 EIF4A1P60842 406 aaKnown RBP16.55■□□□□ 0.24
PRPF40B-209ENST00000548825 ATP5J2-PTCD1G3V325 749 aa16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 PTCD1O75127 700 aaKnown RBP16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 KLHL40Q2TBA0 621 aa16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 FERMT3Q86UX7 667 aa16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 LMBRD1Q9NUN5 540 aa16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 ZDHHC9Q9Y397 364 aa16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 EDC3Q96F86 508 aaKnown RBP16.54■□□□□ 0.24
PRPF40B-209ENST00000548825 CCDC83Q8IWF9 413 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 CNTROBQ8N137 903 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 GPT2Q8TD30 523 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 NECAB1Q8N987 351 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 KIF1BPQ96EK5 621 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 JAKMIP1Q96N16 626 aaKnown RBP16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 RBSNQ9H1K0 784 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 RASEFQ8IZ41 740 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 CCDC85AQ96PX6 553 aaPredicted RBP16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 AXIN2Q9Y2T1 843 aa16.53■□□□□ 0.24
PRPF40B-209ENST00000548825 RAPGEF4Q8WZA2 1011 aa16.52■□□□□ 0.24
PRPF40B-209ENST00000548825 IP6K1Q92551 441 aa16.52■□□□□ 0.24
PRPF40B-209ENST00000548825 GADD45BO75293 160 aaPredicted RBP16.52■□□□□ 0.23
PRPF40B-209ENST00000548825 G3BP1Q13283 466 aaKnown RBP eCLIP16.52■□□□□ 0.23
PRPF40B-209ENST00000548825 NFATC2IPQ8NCF5 419 aa16.52■□□□□ 0.23
PRPF40B-209ENST00000548825 TMEM63CQ9P1W3 806 aa16.52■□□□□ 0.23
PRPF40B-209ENST00000548825 ANKRD26Q9UPS8 1709 aa16.52■□□□□ 0.23
PRPF40B-209ENST00000548825 CWC22Q9HCG8 908 aaKnown RBP16.51■□□□□ 0.23
PRPF40B-209ENST00000548825 DNAJC2Q99543 621 aaKnown RBP16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 FGD1P98174 961 aa16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 MYD88Q99836 296 aa16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 FSD1Q9BTV5 496 aa16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 DBF4Q9UBU7 674 aaPredicted RBP16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 SMC3Q9UQE7 1217 aa16.5■□□□□ 0.23
PRPF40B-209ENST00000548825 USP31Q70CQ4 1352 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 IBTKQ9P2D0 1353 aaPredicted RBP16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 NRXN3Q9Y4C0 1643 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 AK2P54819 239 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 FAM173BQ6P4H8 233 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 FAM227BQ96M60 508 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 KNDC1Q76NI1 1749 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 AGLP35573 1532 aa16.49■□□□□ 0.23
PRPF40B-209ENST00000548825 BEND3Q5T5X7 828 aa16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 KRT28Q7Z3Y7 464 aa16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 TLR7Q9NYK1 1049 aaKnown RBP16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 CNPY2Q9Y2B0 182 aa16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 PTH1RQ03431 593 aa16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 BICC1Q9H694 974 aaKnown RBP16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 RNMTO43148 476 aaKnown RBP16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 CHGBP05060 677 aa16.48■□□□□ 0.23
PRPF40B-209ENST00000548825 PTMSP20962 102 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 DNTTIP2Q5QJE6 756 aaKnown RBP16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 COPS6Q7L5N1 327 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 SSH3Q8TE77 659 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 NEUROD6Q96NK8 337 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 TECPR2O15040 1411 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 ADCK5Q3MIX3 580 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 NCOA3Q9Y6Q9 1424 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 TTC5Q8N0Z6 440 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 SUCLG2Q96I99 432 aa16.47■□□□□ 0.23
PRPF40B-209ENST00000548825 XAGE3Q8WTP9 111 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 GPATCH3Q96I76 525 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 NEXNQ0ZGT2 675 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 AKAP4Q5JQC9 854 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 USP48Q86UV5 1035 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 LRRC2Q9BYS8 371 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 SNX14Q9Y5W7 946 aa16.46■□□□□ 0.23
PRPF40B-209ENST00000548825 HTATSF1O43719 755 aaKnown RBP16.45■□□□□ 0.22
PRPF40B-209ENST00000548825 LARGE1O95461 756 aa16.45■□□□□ 0.22
PRPF40B-209ENST00000548825 UBE3BQ7Z3V4 1068 aa16.45■□□□□ 0.22
PRPF40B-209ENST00000548825 ZNF830Q96NB3 372 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-209ENST00000548825 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-209ENST00000548825 KAT6BQ8WYB5 2073 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms