RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 FHDC1Q9C0D6 1143 aaPredicted RBP14.15□□□□□ -0.14
HMGA2-209ENST00000539662 CCDC87Q9NVE4 849 aa14.15□□□□□ -0.14
HMGA2-209ENST00000539662 SRP68Q9UHB9 627 aaKnown RBP14.15□□□□□ -0.14
HMGA2-209ENST00000539662 USP16Q9Y5T5 823 aa14.15□□□□□ -0.14
HMGA2-209ENST00000539662 A1BGP04217 495 aa14.14□□□□□ -0.15
HMGA2-209ENST00000539662 FMNL2Q96PY5 1086 aa14.14□□□□□ -0.15
HMGA2-209ENST00000539662 MRS2Q9HD23 443 aa14.14□□□□□ -0.15
HMGA2-209ENST00000539662 SOS1Q07889 1333 aaPredicted RBP14.14□□□□□ -0.15
HMGA2-209ENST00000539662 APAF1O14727 1248 aa14.13□□□□□ -0.15
HMGA2-209ENST00000539662 CANXP27824 592 aaKnown RBP14.13□□□□□ -0.15
HMGA2-209ENST00000539662 GYS1P13807 737 aa14.12□□□□□ -0.15
HMGA2-209ENST00000539662 KLHL34Q8N239 644 aa14.12□□□□□ -0.15
HMGA2-209ENST00000539662 SYT17Q9BSW7 474 aa14.12□□□□□ -0.15
HMGA2-209ENST00000539662 POLD1P28340 1107 aa14.11□□□□□ -0.15
HMGA2-209ENST00000539662 NLGN2Q8NFZ4 835 aa14.11□□□□□ -0.15
HMGA2-209ENST00000539662 ADRA2BP18089 450 aa14.1□□□□□ -0.15
HMGA2-209ENST00000539662 HMGB2P26583 209 aaKnown RBP14.1□□□□□ -0.15
HMGA2-209ENST00000539662 RFC4P35249 363 aa14.1□□□□□ -0.15
HMGA2-209ENST00000539662 EIF4A1P60842 406 aaKnown RBP14.1□□□□□ -0.15
HMGA2-209ENST00000539662 FKBP8Q14318 412 aa14.1□□□□□ -0.15
HMGA2-209ENST00000539662 BCL2L12Q9HB09 334 aa14.1□□□□□ -0.15
HMGA2-209ENST00000539662 USP42Q9H9J4 1324 aaKnown RBP14.1□□□□□ -0.15
HMGA2-209ENST00000539662 COL15A1P39059 1388 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 NBPF26B4DH59 902 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 MMP10P09238 476 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 EIF5P55010 431 aaKnown RBP14.09□□□□□ -0.15
HMGA2-209ENST00000539662 KRT24Q2M2I5 525 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 USPL1Q5W0Q7 1092 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 NBPF10Q6P3W6 841 aaKnown RBP14.09□□□□□ -0.15
HMGA2-209ENST00000539662 NBPF15Q8N660 670 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 LAMB4A4D0S4 1761 aa14.09□□□□□ -0.15
HMGA2-209ENST00000539662 GIGYF1O75420 1035 aaPredicted RBP14.08□□□□□ -0.16
HMGA2-209ENST00000539662 STARD3NLO95772 234 aa14.08□□□□□ -0.16
HMGA2-209ENST00000539662 SNRPA1P09661 255 aaKnown RBP14.08□□□□□ -0.16
HMGA2-209ENST00000539662 TSPYL4Q9UJ04 414 aa14.08□□□□□ -0.16
HMGA2-209ENST00000539662 ZNF330Q9Y3S2 320 aaPredicted RBP14.08□□□□□ -0.16
HMGA2-209ENST00000539662 DDR1Q08345 913 aa14.07□□□□□ -0.16
HMGA2-209ENST00000539662 TEX13AQ9BXU3 409 aaPredicted RBP14.07□□□□□ -0.16
HMGA2-209ENST00000539662 TBC1D2BQ9UPU7 963 aa14.07□□□□□ -0.16
HMGA2-209ENST00000539662 LAS1LQ9Y4W2 734 aaKnown RBP14.07□□□□□ -0.16
HMGA2-209ENST00000539662 UTRNP46939 3433 aa14.06□□□□□ -0.16
HMGA2-209ENST00000539662 CHL1O00533 1208 aa14.06□□□□□ -0.16
HMGA2-209ENST00000539662 LMOD3Q0VAK6 560 aa14.06□□□□□ -0.16
HMGA2-209ENST00000539662 NARFQ9UHQ1 456 aa14.06□□□□□ -0.16
HMGA2-209ENST00000539662 GOLGB1Q14789 3259 aaKnown RBP14.06□□□□□ -0.16
HMGA2-209ENST00000539662 KIAA1551Q9HCM1 1747 aa14.05□□□□□ -0.16
HMGA2-209ENST00000539662 IL6STP40189 918 aaPredicted RBP14.05□□□□□ -0.16
HMGA2-209ENST00000539662 FAM9BQ8IZU0 186 aa14.05□□□□□ -0.16
HMGA2-209ENST00000539662 NLGN1Q8N2Q7 840 aa14.05□□□□□ -0.16
HMGA2-209ENST00000539662 SCN7AQ01118 1682 aa14.04□□□□□ -0.16
HMGA2-209ENST00000539662 TM4SF1P30408 202 aa14.04□□□□□ -0.16
HMGA2-209ENST00000539662 WWC3Q9ULE0 1092 aa14.04□□□□□ -0.16
HMGA2-209ENST00000539662 SALL2Q9Y467 1007 aaPredicted RBP14.04□□□□□ -0.16
HMGA2-209ENST00000539662 BCORQ6W2J9 1755 aa14.04□□□□□ -0.16
HMGA2-209ENST00000539662 AFDNP55196 1824 aaKnown RBP14.04□□□□□ -0.16
HMGA2-209ENST00000539662 ZPR1O75312 459 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 ANXA1P04083 346 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 ZNF853P0CG23 659 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 NFIXQ14938 502 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 NECTIN2Q92692 538 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 MBIPQ9NS73 344 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 N4BP2Q86UW6 1770 aaPredicted RBP14.03□□□□□ -0.16
HMGA2-209ENST00000539662 KIF13BQ9NQT8 1826 aa14.03□□□□□ -0.16
HMGA2-209ENST00000539662 POLRMTO00411 1230 aaKnown RBP14.02□□□□□ -0.17
HMGA2-209ENST00000539662 CAMTA2O94983 1202 aa14.02□□□□□ -0.17
HMGA2-209ENST00000539662 PROSER3Q2NL68 480 aa14.02□□□□□ -0.17
HMGA2-209ENST00000539662 TBC1D9BQ66K14 1250 aa14.02□□□□□ -0.17
HMGA2-209ENST00000539662 BICDL1Q6ZP65 573 aa14.02□□□□□ -0.17
HMGA2-209ENST00000539662 NGEFQ8N5V2 710 aa14.02□□□□□ -0.17
HMGA2-209ENST00000539662 MYL6BP14649 208 aa14.01□□□□□ -0.17
HMGA2-209ENST00000539662 EIF2S2P20042 333 aaKnown RBP14.01□□□□□ -0.17
HMGA2-209ENST00000539662 PDIA6Q15084 440 aa14.01□□□□□ -0.17
HMGA2-209ENST00000539662 DZIP3Q86Y13 1208 aaKnown RBP14.01□□□□□ -0.17
HMGA2-209ENST00000539662 CFAP44Q96MT7 982 aa14.01□□□□□ -0.17
HMGA2-209ENST00000539662 BABAM1Q9NWV8 329 aa14.01□□□□□ -0.17
HMGA2-209ENST00000539662 CD2APQ9Y5K6 639 aa14.01□□□□□ -0.17
HMGA2-209ENST00000539662 C10orf71Q711Q0 1435 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 YBX3P16989 372 aaKnown RBP eCLIP14□□□□□ -0.17
HMGA2-209ENST00000539662 TTLL7Q6ZT98 887 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 LRP10Q7Z4F1 713 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 WWC1Q8IX03 1113 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 CCDC24Q8N4L8 307 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 PARP3Q9Y6F1 533 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 NRXN2Q9P2S2 1712 aa14□□□□□ -0.17
HMGA2-209ENST00000539662 A0A087WZG4 1122 aa13.99□□□□□ -0.17
HMGA2-209ENST00000539662 HLFQ16534 295 aa13.99□□□□□ -0.17
HMGA2-209ENST00000539662 TSR2Q969E8 191 aaKnown RBP13.99□□□□□ -0.17
HMGA2-209ENST00000539662 PXDNLA1KZ92 1463 aa13.99□□□□□ -0.17
HMGA2-209ENST00000539662 CARMIL3Q8ND23 1372 aa13.98□□□□□ -0.17
HMGA2-209ENST00000539662 A0A0G2JLW4 131 aa13.98□□□□□ -0.17
HMGA2-209ENST00000539662 ELL2O00472 640 aaPredicted RBP13.98□□□□□ -0.17
HMGA2-209ENST00000539662 PELP1Q8IZL8 1130 aaKnown RBP13.98□□□□□ -0.17
HMGA2-209ENST00000539662 C8orf58Q8NAV2 365 aa13.98□□□□□ -0.17
HMGA2-209ENST00000539662 IFT57Q9NWB7 429 aa13.98□□□□□ -0.17
HMGA2-209ENST00000539662 SERPINB2P05120 415 aa13.97□□□□□ -0.17
HMGA2-209ENST00000539662 CCDC27Q2M243 656 aa13.97□□□□□ -0.17
HMGA2-209ENST00000539662 DUSP27Q5VZP5 1158 aa13.97□□□□□ -0.17
HMGA2-209ENST00000539662 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
HMGA2-209ENST00000539662 ANKRD31Q8N7Z5 1873 aa13.97□□□□□ -0.17
HMGA2-209ENST00000539662 NUP98P52948 1817 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms