RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 EIF2S2P20042 333 aaKnown RBP16.98■□□□□ 0.31
LIG1-203ENST00000536218 FKBP5Q13451 457 aaPredicted RBP16.98■□□□□ 0.31
LIG1-203ENST00000536218 TAF7Q15545 349 aaPredicted RBP16.98■□□□□ 0.31
LIG1-203ENST00000536218 NCOA3Q9Y6Q9 1424 aa16.98■□□□□ 0.31
LIG1-203ENST00000536218 DNAJC5Q9H3Z4 198 aa16.97■□□□□ 0.31
LIG1-203ENST00000536218 MAP3K5Q99683 1374 aa16.97■□□□□ 0.31
LIG1-203ENST00000536218 MPRIPQ6WCQ1 1025 aa16.97■□□□□ 0.31
LIG1-203ENST00000536218 C19orf44Q9H6X5 657 aa16.97■□□□□ 0.31
LIG1-203ENST00000536218 MSH6P52701 1360 aa16.97■□□□□ 0.31
LIG1-203ENST00000536218 K7ELQ4 463 aaPredicted RBP16.96■□□□□ 0.31
LIG1-203ENST00000536218 ATF3P18847 181 aa16.96■□□□□ 0.31
LIG1-203ENST00000536218 PDCL2Q8N4E4 241 aa16.96■□□□□ 0.31
LIG1-203ENST00000536218 HTATSF1O43719 755 aaKnown RBP16.96■□□□□ 0.31
LIG1-203ENST00000536218 PRPF40AO75400 957 aaKnown RBP16.96■□□□□ 0.31
LIG1-203ENST00000536218 ZNF530Q6P9A1 599 aaPredicted RBP16.96■□□□□ 0.31
LIG1-203ENST00000536218 AXIN2Q9Y2T1 843 aa16.96■□□□□ 0.31
LIG1-203ENST00000536218 KIF3AQ9Y496 699 aa16.96■□□□□ 0.31
LIG1-203ENST00000536218 PTPRCP08575 1304 aa16.96■□□□□ 0.3
LIG1-203ENST00000536218 SYCE3A1L190 88 aa16.95■□□□□ 0.3
LIG1-203ENST00000536218 C16orf71Q8IYS4 520 aaPredicted RBP16.95■□□□□ 0.3
LIG1-203ENST00000536218 IBTKQ9P2D0 1353 aaPredicted RBP16.95■□□□□ 0.3
LIG1-203ENST00000536218 U2AF2P26368 475 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIG1-203ENST00000536218 C17orf53Q8N3J3 647 aaPredicted RBP16.95■□□□□ 0.3
LIG1-203ENST00000536218 ANKRD24Q8TF21 1146 aa16.95■□□□□ 0.3
LIG1-203ENST00000536218 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIG1-203ENST00000536218 KIF24Q5T7B8 1368 aa16.95■□□□□ 0.3
LIG1-203ENST00000536218 CCDC30Q5VVM6 783 aa16.95■□□□□ 0.3
LIG1-203ENST00000536218 CHMP4AQ9BY43 222 aa16.95■□□□□ 0.3
LIG1-203ENST00000536218 SMARCA5O60264 1052 aaPredicted RBP16.94■□□□□ 0.3
LIG1-203ENST00000536218 FLIIQ13045 1269 aa16.94■□□□□ 0.3
LIG1-203ENST00000536218 ARHGEF25Q86VW2 580 aa16.94■□□□□ 0.3
LIG1-203ENST00000536218 CABLES1Q8TDN4 633 aa16.94■□□□□ 0.3
LIG1-203ENST00000536218 KCNQ3O43525 872 aa16.94■□□□□ 0.3
LIG1-203ENST00000536218 RBM25P49756 843 aaKnown RBP16.94■□□□□ 0.3
LIG1-203ENST00000536218 TAF3Q5VWG9 929 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 RGS12O14924 1447 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 HMGN5P82970 282 aaKnown RBP16.93■□□□□ 0.3
LIG1-203ENST00000536218 TEFQ10587 303 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 HDGFL1Q5TGJ6 251 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 CEP85Q6P2H3 762 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 KCNJ4P48050 445 aa16.93■□□□□ 0.3
LIG1-203ENST00000536218 ANKRD44Q8N8A2 993 aa16.92■□□□□ 0.3
LIG1-203ENST00000536218 ZNF142P52746 1687 aaPredicted RBP16.92■□□□□ 0.3
LIG1-203ENST00000536218 ANXA1P04083 346 aa16.92■□□□□ 0.3
LIG1-203ENST00000536218 BCL2L12Q9HB09 334 aa16.92■□□□□ 0.3
LIG1-203ENST00000536218 NWD1Q149M9 1564 aa16.92■□□□□ 0.3
LIG1-203ENST00000536218 PRIMPOLQ96LW4 560 aa16.91■□□□□ 0.3
LIG1-203ENST00000536218 PHAXQ9H814 394 aaKnown RBP16.91■□□□□ 0.3
LIG1-203ENST00000536218 RTL1A6NKG5 1358 aa16.91■□□□□ 0.3
LIG1-203ENST00000536218 PLEKHO1Q53GL0 409 aaPredicted RBP16.91■□□□□ 0.3
LIG1-203ENST00000536218 OTUD7AQ8TE49 926 aaPredicted RBP16.91■□□□□ 0.3
LIG1-203ENST00000536218 DCTPP1Q9H773 170 aa16.91■□□□□ 0.3
LIG1-203ENST00000536218 LMBRD1Q9NUN5 540 aa16.91■□□□□ 0.3
LIG1-203ENST00000536218 TMEM94Q12767 1356 aa16.91■□□□□ 0.3
LIG1-203ENST00000536218 C1orf141Q5JVX7 400 aa16.9■□□□□ 0.3
LIG1-203ENST00000536218 FOXD4L5Q5VV16 416 aaPredicted RBP16.9■□□□□ 0.3
LIG1-203ENST00000536218 RPAP2Q8IXW5 612 aaPredicted RBP16.9■□□□□ 0.3
LIG1-203ENST00000536218 FOXD4L4Q8WXT5 416 aaPredicted RBP16.9■□□□□ 0.3
LIG1-203ENST00000536218 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
LIG1-203ENST00000536218 CHAMP1Q96JM3 812 aa16.9■□□□□ 0.3
LIG1-203ENST00000536218 NLRP2Q9NX02 1062 aa16.89■□□□□ 0.3
LIG1-203ENST00000536218 BTBD11A6QL63 1104 aa16.89■□□□□ 0.29
LIG1-203ENST00000536218 CCT4P50991 539 aaKnown RBP16.89■□□□□ 0.29
LIG1-203ENST00000536218 PKP1Q13835 747 aa16.89■□□□□ 0.29
LIG1-203ENST00000536218 NOLC1Q14978 699 aaKnown RBP eCLIP16.89■□□□□ 0.298e-7■■■□□ 15.4
LIG1-203ENST00000536218 CHRNA2Q15822 529 aa16.89■□□□□ 0.29
LIG1-203ENST00000536218 C1orf167Q5SNV9 1468 aa16.88■□□□□ 0.29
LIG1-203ENST00000536218 BMP2KLQ5H9B9 411 aa16.88■□□□□ 0.29
LIG1-203ENST00000536218 LTN1O94822 1766 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 NFAT5O94916 1531 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 CSB-PGBD3P0DP91 1061 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 LRSAM1Q6UWE0 723 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 GPT2Q8TD30 523 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 KIF2CQ99661 725 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 PLEKHM2Q8IWE5 1019 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 TTC12Q9H892 705 aaPredicted RBP16.87■□□□□ 0.29
LIG1-203ENST00000536218 EXOC6BQ9Y2D4 811 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 IRX5P78411 483 aaPredicted RBP16.87■□□□□ 0.29
LIG1-203ENST00000536218 AKAP4Q5JQC9 854 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 TMEM63CQ9P1W3 806 aa16.87■□□□□ 0.29
LIG1-203ENST00000536218 GNAI2P04899 355 aa16.86■□□□□ 0.29
LIG1-203ENST00000536218 EIF4A1P60842 406 aaKnown RBP16.86■□□□□ 0.29
LIG1-203ENST00000536218 TBC1D9Q6ZT07 1266 aa16.86■□□□□ 0.29
LIG1-203ENST00000536218 CHPF2Q9P2E5 772 aa16.86■□□□□ 0.29
LIG1-203ENST00000536218 ATP10DQ9P241 1426 aa16.85■□□□□ 0.29
LIG1-203ENST00000536218 HMMRO75330 724 aa16.85■□□□□ 0.29
LIG1-203ENST00000536218 GSPT1P15170 499 aaKnown RBP16.85■□□□□ 0.29
LIG1-203ENST00000536218 CERS3Q8IU89 383 aa16.85■□□□□ 0.29
LIG1-203ENST00000536218 RNMTO43148 476 aaKnown RBP16.84■□□□□ 0.29
LIG1-203ENST00000536218 NUCB2P80303 420 aa16.84■□□□□ 0.29
LIG1-203ENST00000536218 AMOTQ4VCS5 1084 aa16.84■□□□□ 0.29
LIG1-203ENST00000536218 NSFL1CQ9UNZ2 370 aaKnown RBP16.84■□□□□ 0.29
LIG1-203ENST00000536218 PRAMEF22A3QJZ6 481 aa16.83■□□□□ 0.29
LIG1-203ENST00000536218 TPRNQ4KMQ1 711 aa16.83■□□□□ 0.29
LIG1-203ENST00000536218 LRRFIP2Q9Y608 721 aaKnown RBP16.83■□□□□ 0.29
LIG1-203ENST00000536218 CLEC17AQ6ZS10 378 aa16.83■□□□□ 0.28
LIG1-203ENST00000536218 PIBF1Q8WXW3 757 aa16.83■□□□□ 0.28
LIG1-203ENST00000536218 PNMA6EA0A0J9YXQ4 647 aa16.83■□□□□ 0.28
LIG1-203ENST00000536218 GTF2F1P35269 517 aaKnown RBP eCLIP16.83■□□□□ 0.282e-10■■■■■ 37.3
LIG1-203ENST00000536218 PLCB2Q00722 1185 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms