RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 USPL1Q5W0Q7 1092 aa22.5■■□□□ 1.19
CHMP4A-203ENST00000527154 MTHFSP49914 203 aa22.49■■□□□ 1.19
CHMP4A-203ENST00000527154 CREBZFQ9NS37 354 aa22.49■■□□□ 1.19
CHMP4A-203ENST00000527154 SLC34A2O95436 690 aa22.48■■□□□ 1.19
CHMP4A-203ENST00000527154 TTLL6Q8N841 843 aa22.48■■□□□ 1.19
CHMP4A-203ENST00000527154 BCL2L12Q9HB09 334 aa22.48■■□□□ 1.19
CHMP4A-203ENST00000527154 NARFQ9UHQ1 456 aa22.48■■□□□ 1.19
CHMP4A-203ENST00000527154 MRC1P22897 1456 aa22.47■■□□□ 1.19
CHMP4A-203ENST00000527154 ZPR1O75312 459 aa22.46■■□□□ 1.19
CHMP4A-203ENST00000527154 CYP19A1P11511 503 aaPredicted RBP22.45■■□□□ 1.18
CHMP4A-203ENST00000527154 DNAJC10Q8IXB1 793 aa22.45■■□□□ 1.18
CHMP4A-203ENST00000527154 PRDM10Q9NQV6 1147 aa22.45■■□□□ 1.18
CHMP4A-203ENST00000527154 SCN11AQ9UI33 1791 aa22.45■■□□□ 1.18
CHMP4A-203ENST00000527154 AEBP1Q8IUX7 1158 aa22.44■■□□□ 1.18
CHMP4A-203ENST00000527154 CARMIL3Q8ND23 1372 aa22.44■■□□□ 1.18
CHMP4A-203ENST00000527154 COL15A1P39059 1388 aa22.43■■□□□ 1.18
CHMP4A-203ENST00000527154 LTBP3Q9NS15 1303 aa22.43■■□□□ 1.18
CHMP4A-203ENST00000527154 SERPINB2P05120 415 aa22.43■■□□□ 1.18
CHMP4A-203ENST00000527154 C1orf141Q5JVX7 400 aa22.43■■□□□ 1.18
CHMP4A-203ENST00000527154 CCDC88AQ3V6T2 1871 aa22.43■■□□□ 1.18
CHMP4A-203ENST00000527154 CNTNAP1P78357 1384 aa22.42■■□□□ 1.18
CHMP4A-203ENST00000527154 DICER1Q9UPY3 1922 aaKnown RBP22.42■■□□□ 1.18
CHMP4A-203ENST00000527154 DPY19L2Q6NUT2 758 aa22.42■■□□□ 1.18
CHMP4A-203ENST00000527154 FER1L6Q2WGJ9 1857 aa22.41■■□□□ 1.18
CHMP4A-203ENST00000527154 FOXN1O15353 648 aa22.41■■□□□ 1.18
CHMP4A-203ENST00000527154 CHADLQ6NUI6 762 aa22.41■■□□□ 1.18
CHMP4A-203ENST00000527154 PASKQ96RG2 1323 aa22.4■■□□□ 1.18
CHMP4A-203ENST00000527154 C2CD5Q86YS7 1000 aa22.4■■□□□ 1.18
CHMP4A-203ENST00000527154 SLC52A2Q9HAB3 445 aa22.4■■□□□ 1.18
CHMP4A-203ENST00000527154 ZBTB1Q9Y2K1 713 aa22.4■■□□□ 1.18
CHMP4A-203ENST00000527154 PDZRN3Q9UPQ7 1066 aa22.39■■□□□ 1.17
CHMP4A-203ENST00000527154 H0YIN7 160 aa22.38■■□□□ 1.17
CHMP4A-203ENST00000527154 MKRN1Q9UHC7 482 aaKnown RBP22.38■■□□□ 1.17
CHMP4A-203ENST00000527154 ANKRD31Q8N7Z5 1873 aa22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 POTEIP0CG38 1075 aa22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 POTEJP0CG39 1038 aa22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 TNNT2P45379 298 aaPredicted RBP22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 AKAP4Q5JQC9 854 aa22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 VSIG10Q8N0Z9 540 aa22.37■■□□□ 1.17
CHMP4A-203ENST00000527154 ERFEQ4G0M1 354 aa22.35■■□□□ 1.17
CHMP4A-203ENST00000527154 IL13P35225 146 aa22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 EIF5P55010 431 aaKnown RBP22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 SULT6B1Q6IMI4 303 aa22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 L3MBTL3Q96JM7 780 aaPredicted RBP22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 BRIP1Q9BX63 1249 aa22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 LGR6Q9HBX8 967 aa22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 COL11A2P13942 1736 aaPredicted RBP22.34■■□□□ 1.17
CHMP4A-203ENST00000527154 WBP1LQ9NX94 342 aa22.33■■□□□ 1.17
CHMP4A-203ENST00000527154 UBR2Q8IWV8 1755 aa22.33■■□□□ 1.16
CHMP4A-203ENST00000527154 CTCFP49711 727 aaPredicted RBP22.32■■□□□ 1.16
CHMP4A-203ENST00000527154 SLC39A6Q13433 755 aa22.32■■□□□ 1.16
CHMP4A-203ENST00000527154 RNMTO43148 476 aaKnown RBP22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 C21orf2O43822 256 aa22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 DDNO94850 711 aaPredicted RBP22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 ITGBL1O95965 494 aaPredicted RBP22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 LDHDQ86WU2 507 aa22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 VIRMAQ69YN4 1812 aaKnown RBP22.31■■□□□ 1.16
CHMP4A-203ENST00000527154 PDE6BP35913 854 aa22.3■■□□□ 1.16
CHMP4A-203ENST00000527154 PRR5LQ6MZQ0 368 aa22.3■■□□□ 1.16
CHMP4A-203ENST00000527154 TAOK3Q9H2K8 898 aa22.3■■□□□ 1.16
CHMP4A-203ENST00000527154 SCN7AQ01118 1682 aa22.3■■□□□ 1.16
CHMP4A-203ENST00000527154 VEGFBP49765 207 aa22.29■■□□□ 1.16
CHMP4A-203ENST00000527154 ADAMTSL1Q8N6G6 1762 aa22.29■■□□□ 1.16
CHMP4A-203ENST00000527154 SCN4AP35499 1836 aa22.29■■□□□ 1.16
CHMP4A-203ENST00000527154 IQCA1LA6NCM1 817 aa22.28■■□□□ 1.16
CHMP4A-203ENST00000527154 TBC1D9BQ66K14 1250 aa22.28■■□□□ 1.16
CHMP4A-203ENST00000527154 TAF1DQ9H5J8 278 aaPredicted RBP22.28■■□□□ 1.16
CHMP4A-203ENST00000527154 C7orf43Q8WVR3 580 aa22.27■■□□□ 1.16
CHMP4A-203ENST00000527154 ZNF622Q969S3 477 aaKnown RBP eCLIP22.27■■□□□ 1.163e-9■■■■□ 21.5
CHMP4A-203ENST00000527154 ARFGEF2Q9Y6D5 1785 aa22.27■■□□□ 1.16
CHMP4A-203ENST00000527154 A0A087WZG4 1122 aa22.26■■□□□ 1.15
CHMP4A-203ENST00000527154 TMEM88BA6NKF7 163 aa22.26■■□□□ 1.15
CHMP4A-203ENST00000527154 SLX4Q8IY92 1834 aa22.26■■□□□ 1.15
CHMP4A-203ENST00000527154 RASSF10A6NK89 507 aa22.25■■□□□ 1.15
CHMP4A-203ENST00000527154 SRGNP10124 158 aa22.25■■□□□ 1.15
CHMP4A-203ENST00000527154 STYK1Q6J9G0 422 aa22.25■■□□□ 1.15
CHMP4A-203ENST00000527154 CNKSR1Q969H4 720 aa22.25■■□□□ 1.15
CHMP4A-203ENST00000527154 SOGA3Q5TF21 947 aa22.24■■□□□ 1.15
CHMP4A-203ENST00000527154 CANXP27824 592 aaKnown RBP22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 LBX1P52954 281 aa22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 PRPF40BQ6NWY9 871 aaKnown RBP22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 BICDL1Q6ZP65 573 aa22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 AIDAQ96BJ3 306 aa22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 ABHD8Q96I13 439 aa22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 PANK3Q9H999 370 aa22.23■■□□□ 1.15
CHMP4A-203ENST00000527154 STARD3NLO95772 234 aa22.22■■□□□ 1.15
CHMP4A-203ENST00000527154 HSPA8P11142 646 aaKnown RBP22.22■■□□□ 1.15
CHMP4A-203ENST00000527154 RGS19P49795 217 aa22.21■■□□□ 1.15
CHMP4A-203ENST00000527154 THSD7BQ9C0I4 1608 aa22.2■■□□□ 1.15
CHMP4A-203ENST00000527154 IL6STP40189 918 aaPredicted RBP22.2■■□□□ 1.14
CHMP4A-203ENST00000527154 MORC1Q86VD1 984 aa22.2■■□□□ 1.14
CHMP4A-203ENST00000527154 MASTLQ96GX5 879 aa22.2■■□□□ 1.14
CHMP4A-203ENST00000527154 ZNF219Q9P2Y4 722 aaPredicted RBP22.2■■□□□ 1.14
CHMP4A-203ENST00000527154 TIMELESSQ9UNS1 1208 aa22.2■■□□□ 1.14
CHMP4A-203ENST00000527154 KLRG2A4D1S0 409 aaPredicted RBP22.19■■□□□ 1.14
CHMP4A-203ENST00000527154 CAMTA2O94983 1202 aa22.19■■□□□ 1.14
CHMP4A-203ENST00000527154 MTHFSDQ2M296 383 aaKnown RBP22.19■■□□□ 1.14
CHMP4A-203ENST00000527154 HEG1Q9ULI3 1381 aa22.19■■□□□ 1.14
CHMP4A-203ENST00000527154 FAM161AQ3B820 660 aa22.18■■□□□ 1.14
CHMP4A-203ENST00000527154 CCDC24Q8N4L8 307 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms