RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 CCDC192P0DO97 292 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 AMPHP49418 695 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 JAKMIP1Q96N16 626 aaKnown RBP9.09□□□□□ -0.95
NEDD9-208ENST00000504387 CCDC9Q9Y3X0 531 aaKnown RBP9.09□□□□□ -0.95
NEDD9-208ENST00000504387 OS9Q13438 667 aaPredicted RBP9.09□□□□□ -0.95
NEDD9-208ENST00000504387 CUL4AQ13619 759 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 ADCK5Q3MIX3 580 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 PRPF40BQ6NWY9 871 aaKnown RBP9.09□□□□□ -0.95
NEDD9-208ENST00000504387 RUFY3Q7L099 469 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 SLC52A1Q9NWF4 448 aa9.09□□□□□ -0.95
NEDD9-208ENST00000504387 POLR3GO15318 223 aaPredicted RBP9.09□□□□□ -0.96
NEDD9-208ENST00000504387 ELF2Q15723 593 aa9.09□□□□□ -0.96
NEDD9-208ENST00000504387 NGDNQ8NEJ9 315 aaKnown RBP9.09□□□□□ -0.96
NEDD9-208ENST00000504387 BICD2Q8TD16 824 aa9.09□□□□□ -0.96
NEDD9-208ENST00000504387 TNMDQ9H2S6 317 aa9.09□□□□□ -0.96
NEDD9-208ENST00000504387 TMX1Q9H3N1 280 aa9.09□□□□□ -0.96
NEDD9-208ENST00000504387 SPTLC3Q9NUV7 552 aa9.09□□□□□ -0.96
NEDD9-208ENST00000504387 ZNF215Q9UL58 517 aaPredicted RBP9.09□□□□□ -0.96
NEDD9-208ENST00000504387 SPHKAPQ2M3C7 1700 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 UVSSAQ2YD98 709 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 FMNL2Q96PY5 1086 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 GTF2F1P35269 517 aaKnown RBP eCLIP9.08□□□□□ -0.967e-8■■■□□ 19.1
NEDD9-208ENST00000504387 TYRO3Q06418 890 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 LMOD3Q0VAK6 560 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 CCDC144BQ3MJ40 725 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 CCDC144CPQ8IYA2 1237 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 CACTINQ8WUQ7 758 aaKnown RBP9.08□□□□□ -0.96
NEDD9-208ENST00000504387 STK31Q9BXU1 1019 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 CLIP2Q9UDT6 1046 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 USP16Q9Y5T5 823 aa9.08□□□□□ -0.96
NEDD9-208ENST00000504387 GNAI2P04899 355 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 MCM2P49736 904 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 PTPN21Q16825 1174 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 LARP1BQ659C4 914 aaKnown RBP9.07□□□□□ -0.96
NEDD9-208ENST00000504387 NUP62CLQ9H1M0 184 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 CBX8Q9HC52 389 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 CTNNA3Q9UI47 895 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 SNX14Q9Y5W7 946 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 MAP3K4Q9Y6R4 1608 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 ANXA1P04083 346 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 CDC37L1Q7L3B6 337 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 TTC6Q86TZ1 520 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 FAM177A1Q8N128 213 aaPredicted RBP9.07□□□□□ -0.96
NEDD9-208ENST00000504387 OGFRQ9NZT2 677 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 RPAP1Q9BWH6 1393 aaPredicted RBP9.07□□□□□ -0.96
NEDD9-208ENST00000504387 MAP3K11Q16584 847 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 USHBP1Q8N6Y0 703 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 ANKRD7Q92527 254 aa9.07□□□□□ -0.96
NEDD9-208ENST00000504387 IL13P35225 146 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 IRX5P78411 483 aaPredicted RBP9.06□□□□□ -0.96
NEDD9-208ENST00000504387 CEP135Q66GS9 1140 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 LIMCH1Q9UPQ0 1083 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 SLFN14P0C7P3 912 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 ZNF853P0CG23 659 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 ZNF165P49910 485 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 KMT5BQ4FZB7 885 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 ZSCAN25Q6NSZ9 544 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 MRVI1Q9Y6F6 885 aa9.06□□□□□ -0.96
NEDD9-208ENST00000504387 WASLO00401 505 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-208ENST00000504387 PTH1RQ03431 593 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 INTS4Q96HW7 963 aaKnown RBP9.05□□□□□ -0.96
NEDD9-208ENST00000504387 ISM2Q6H9L7 571 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 PDRG1Q9NUG6 133 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 MTMR6Q9Y217 621 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 ATP10DQ9P241 1426 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 MED14O60244 1454 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 NR1I2O75469 434 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 SKIDA1Q1XH10 827 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 FBXO38Q6PIJ6 1188 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 LRRN4CLQ8ND94 238 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 TRIM34Q9BYJ4 488 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 LRRC2Q9BYS8 371 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 FTOQ9C0B1 505 aaKnown RBP eCLIP9.05□□□□□ -0.96
NEDD9-208ENST00000504387 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.05□□□□□ -0.96
NEDD9-208ENST00000504387 CCDC61Q9Y6R9 512 aa9.05□□□□□ -0.96
NEDD9-208ENST00000504387 PTCH1Q13635 1447 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 EIF4A2Q14240 407 aaKnown RBP9.04□□□□□ -0.96
NEDD9-208ENST00000504387 KIF18AQ8NI77 898 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 FAM200AQ8TCP9 573 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 EPC1Q9H2F5 836 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 NSD2O96028 1365 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 SBNO2Q9Y2G9 1366 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 INO80Q9ULG1 1556 aaPredicted RBP9.04□□□□□ -0.96
NEDD9-208ENST00000504387 GOLGA6L19H0YKK7 550 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 PTPN14Q15678 1187 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 ME3Q16798 604 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 ERCC6LQ2NKX8 1250 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 SPATA32Q96LK8 384 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 KIF1BO60333 1816 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 MYOM2P54296 1465 aa9.04□□□□□ -0.96
NEDD9-208ENST00000504387 YTHDC2Q9H6S0 1430 aaKnown RBP9.03□□□□□ -0.96
NEDD9-208ENST00000504387 TET3O43151 1660 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 SRGAP3O43295 1099 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 SKILP12757 684 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 CEBPAP49715 358 aaPredicted RBP9.03□□□□□ -0.96
NEDD9-208ENST00000504387 GUCY1B3Q02153 619 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 FUCA2Q9BTY2 467 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 DDX41Q9UJV9 622 aaKnown RBP9.03□□□□□ -0.96
NEDD9-208ENST00000504387 ATP6V1DQ9Y5K8 247 aa9.03□□□□□ -0.96
NEDD9-208ENST00000504387 LRRC7Q96NW7 1537 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms