RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 THSD7BQ9C0I4 1608 aa17.75■□□□□ 0.43
LSM6-204ENST00000504181 USP42Q9H9J4 1324 aaKnown RBP17.74■□□□□ 0.43
LSM6-204ENST00000504181 TMEM88BA6NKF7 163 aa17.74■□□□□ 0.43
LSM6-204ENST00000504181 COL11A2P13942 1736 aaPredicted RBP17.74■□□□□ 0.43
LSM6-204ENST00000504181 NCAPD2Q15021 1401 aa17.73■□□□□ 0.43
LSM6-204ENST00000504181 ADAMTSL1Q8N6G6 1762 aa17.72■□□□□ 0.43
LSM6-204ENST00000504181 PHKG2P15735 406 aa17.72■□□□□ 0.43
LSM6-204ENST00000504181 TTLL6Q8N841 843 aa17.72■□□□□ 0.43
LSM6-204ENST00000504181 GGNBP2Q9H3C7 697 aa17.72■□□□□ 0.43
LSM6-204ENST00000504181 ERFEQ4G0M1 354 aa17.71■□□□□ 0.43
LSM6-204ENST00000504181 IFNL2Q8IZJ0 200 aa17.71■□□□□ 0.43
LSM6-204ENST00000504181 TRPM7Q96QT4 1865 aa17.71■□□□□ 0.43
LSM6-204ENST00000504181 DDNO94850 711 aaPredicted RBP17.7■□□□□ 0.42
LSM6-204ENST00000504181 TM4SF1P30408 202 aa17.7■□□□□ 0.42
LSM6-204ENST00000504181 MAP2K1Q02750 393 aaPredicted RBP17.7■□□□□ 0.42
LSM6-204ENST00000504181 ARFGEF2Q9Y6D5 1785 aa17.69■□□□□ 0.42
LSM6-204ENST00000504181 CRKLP46109 303 aaKnown RBP17.69■□□□□ 0.42
LSM6-204ENST00000504181 LTBP1Q14766 1721 aa17.68■□□□□ 0.42
LSM6-204ENST00000504181 DEFB115Q30KQ5 88 aa17.68■□□□□ 0.42
LSM6-204ENST00000504181 LDHDQ86WU2 507 aa17.68■□□□□ 0.42
LSM6-204ENST00000504181 WDR33Q9C0J8 1336 aaKnown RBP17.68■□□□□ 0.42
LSM6-204ENST00000504181 SLX4Q8IY92 1834 aa17.68■□□□□ 0.42
LSM6-204ENST00000504181 KIF24Q5T7B8 1368 aa17.67■□□□□ 0.42
LSM6-204ENST00000504181 RASSF10A6NK89 507 aa17.67■□□□□ 0.42
LSM6-204ENST00000504181 FYB1O15117 783 aa17.67■□□□□ 0.42
LSM6-204ENST00000504181 ZNF219Q9P2Y4 722 aaPredicted RBP17.67■□□□□ 0.42
LSM6-204ENST00000504181 ITGBL1O95965 494 aaPredicted RBP17.66■□□□□ 0.42
LSM6-204ENST00000504181 USPL1Q5W0Q7 1092 aa17.66■□□□□ 0.42
LSM6-204ENST00000504181 C2CD5Q86YS7 1000 aa17.66■□□□□ 0.42
LSM6-204ENST00000504181 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.66■□□□□ 0.424e-7■■■□□ 17.4
LSM6-204ENST00000504181 TONSLQ96HA7 1378 aa17.66■□□□□ 0.42
LSM6-204ENST00000504181 PUS7Q96PZ0 661 aaKnown RBP17.65■□□□□ 0.42
LSM6-204ENST00000504181 CARD11Q9BXL7 1154 aa17.65■□□□□ 0.42
LSM6-204ENST00000504181 EMILIN1Q9Y6C2 1016 aa17.65■□□□□ 0.42
LSM6-204ENST00000504181 CARMIL3Q8ND23 1372 aa17.65■□□□□ 0.42
LSM6-204ENST00000504181 IQCA1LA6NCM1 817 aa17.64■□□□□ 0.41
LSM6-204ENST00000504181 PTCD1O75127 700 aaKnown RBP17.64■□□□□ 0.41
LSM6-204ENST00000504181 EAPPQ56P03 285 aaPredicted RBP17.64■□□□□ 0.41
LSM6-204ENST00000504181 PPP4R3CPQ6ZMV5 832 aa17.64■□□□□ 0.41
LSM6-204ENST00000504181 H0YIN7 160 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 C21orf2O43822 256 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 ZPR1O75312 459 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 TAF1DQ9H5J8 278 aaPredicted RBP17.63■□□□□ 0.41
LSM6-204ENST00000504181 TSKSQ9UJT2 592 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 CLEC11AQ9Y240 323 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 SCN11AQ9UI33 1791 aa17.63■□□□□ 0.41
LSM6-204ENST00000504181 ERVV-2B6SEH9 535 aa17.62■□□□□ 0.41
LSM6-204ENST00000504181 NFIXQ14938 502 aa17.62■□□□□ 0.41
LSM6-204ENST00000504181 EYA1Q99502 592 aa17.62■□□□□ 0.41
LSM6-204ENST00000504181 BEGAINQ9BUH8 593 aa17.62■□□□□ 0.41
LSM6-204ENST00000504181 MCOLN1Q9GZU1 580 aa17.62■□□□□ 0.41
LSM6-204ENST00000504181 ABT1Q9ULW3 272 aaKnown RBP17.62■□□□□ 0.41
LSM6-204ENST00000504181 PPM1GO15355 546 aaPredicted RBP17.61■□□□□ 0.41
LSM6-204ENST00000504181 SERPINB2P05120 415 aa17.61■□□□□ 0.41
LSM6-204ENST00000504181 SIN3AQ96ST3 1273 aa17.6■□□□□ 0.41
LSM6-204ENST00000504181 CABP4P57796 275 aa17.59■□□□□ 0.41
LSM6-204ENST00000504181 GRM1Q13255 1194 aa17.59■□□□□ 0.41
LSM6-204ENST00000504181 INTS5Q6P9B9 1019 aaKnown RBP17.59■□□□□ 0.41
LSM6-204ENST00000504181 PAXIP1Q6ZW49 1069 aaPredicted RBP17.59■□□□□ 0.41
LSM6-204ENST00000504181 ZNF622Q969S3 477 aaKnown RBP eCLIP17.59■□□□□ 0.41
LSM6-204ENST00000504181 TAOK3Q9H2K8 898 aa17.59■□□□□ 0.41
LSM6-204ENST00000504181 LTBP3Q9NS15 1303 aa17.58■□□□□ 0.4
LSM6-204ENST00000504181 L3MBTL3Q96JM7 780 aaPredicted RBP17.58■□□□□ 0.4
LSM6-204ENST00000504181 MAP1SQ66K74 1059 aaPredicted RBP17.57■□□□□ 0.4
LSM6-204ENST00000504181 CAPNS2Q96L46 248 aa17.57■□□□□ 0.4
LSM6-204ENST00000504181 NEUROD1Q13562 356 aa17.56■□□□□ 0.4
LSM6-204ENST00000504181 CNTROBQ8N137 903 aa17.56■□□□□ 0.4
LSM6-204ENST00000504181 SOS1Q07889 1333 aaPredicted RBP17.55■□□□□ 0.4
LSM6-204ENST00000504181 CYP4F22Q6NT55 531 aa17.55■□□□□ 0.4
LSM6-204ENST00000504181 SCN7AQ01118 1682 aa17.55■□□□□ 0.4
LSM6-204ENST00000504181 COL15A1P39059 1388 aa17.54■□□□□ 0.4
LSM6-204ENST00000504181 HSP90AB1P08238 724 aaKnown RBP17.54■□□□□ 0.4
LSM6-204ENST00000504181 DGKZQ13574 1117 aa17.54■□□□□ 0.4
LSM6-204ENST00000504181 GPR101Q96P66 508 aaPredicted RBP17.54■□□□□ 0.4
LSM6-204ENST00000504181 BCL2L12Q9HB09 334 aa17.54■□□□□ 0.4
LSM6-204ENST00000504181 NARFQ9UHQ1 456 aa17.54■□□□□ 0.4
LSM6-204ENST00000504181 HACL1Q9UJ83 578 aa17.54■□□□□ 0.4
LSM6-204ENST00000504181 EPHX2P34913 555 aa17.53■□□□□ 0.4
LSM6-204ENST00000504181 BICDL1Q6ZP65 573 aa17.53■□□□□ 0.4
LSM6-204ENST00000504181 WASHC2AQ641Q2 1341 aa17.52■□□□□ 0.4
LSM6-204ENST00000504181 ZNF541Q9H0D2 1346 aa17.52■□□□□ 0.4
LSM6-204ENST00000504181 ECE1P42892 770 aa17.52■□□□□ 0.4
LSM6-204ENST00000504181 DNAJC10Q8IXB1 793 aa17.52■□□□□ 0.4
LSM6-204ENST00000504181 TESK2Q96S53 571 aa17.52■□□□□ 0.4
LSM6-204ENST00000504181 RNF123Q5XPI4 1314 aa17.51■□□□□ 0.39
LSM6-204ENST00000504181 AOC2O75106 756 aa17.51■□□□□ 0.39
LSM6-204ENST00000504181 PRPF38BQ5VTL8 546 aaKnown RBP17.51■□□□□ 0.39
LSM6-204ENST00000504181 CCDC24Q8N4L8 307 aa17.51■□□□□ 0.39
LSM6-204ENST00000504181 NFATC2IPQ8NCF5 419 aa17.51■□□□□ 0.39
LSM6-204ENST00000504181 DDX21Q9NR30 783 aaKnown RBP eCLIP17.51■□□□□ 0.39
LSM6-204ENST00000504181 SOX10P56693 466 aa17.5■□□□□ 0.39
LSM6-204ENST00000504181 FMR1Q06787 632 aaKnown RBP eCLIP17.5■□□□□ 0.39
LSM6-204ENST00000504181 ZNF530Q6P9A1 599 aaPredicted RBP17.5■□□□□ 0.39
LSM6-204ENST00000504181 PDE6BP35913 854 aa17.49■□□□□ 0.39
LSM6-204ENST00000504181 PNMA8AQ86V59 439 aaPredicted RBP17.49■□□□□ 0.39
LSM6-204ENST00000504181 BCORQ6W2J9 1755 aa17.48■□□□□ 0.39
LSM6-204ENST00000504181 ST20-MTHFSA0A0A6YYL1 179 aa17.48■□□□□ 0.39
LSM6-204ENST00000504181 MTHFSP49914 203 aa17.48■□□□□ 0.39
LSM6-204ENST00000504181 PLEKHO1Q53GL0 409 aaPredicted RBP17.47■□□□□ 0.39
LSM6-204ENST00000504181 PRPF40BQ6NWY9 871 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms