RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 AMOTQ4VCS5 1084 aa22.78■■□□□ 1.24
VIM-208ENST00000497849 NFKBIEO00221 500 aa22.76■■□□□ 1.23
VIM-208ENST00000497849 ZPR1O75312 459 aa22.76■■□□□ 1.23
VIM-208ENST00000497849 NFIXQ14938 502 aa22.76■■□□□ 1.23
VIM-208ENST00000497849 SOS1Q07889 1333 aaPredicted RBP22.76■■□□□ 1.23
VIM-208ENST00000497849 SCN11AQ9UI33 1791 aa22.76■■□□□ 1.23
VIM-208ENST00000497849 AEBP1Q8IUX7 1158 aa22.75■■□□□ 1.23
VIM-208ENST00000497849 DNAJC10Q8IXB1 793 aa22.75■■□□□ 1.23
VIM-208ENST00000497849 TTLL6Q8N841 843 aa22.74■■□□□ 1.23
VIM-208ENST00000497849 C1orf141Q5JVX7 400 aa22.73■■□□□ 1.23
VIM-208ENST00000497849 DICER1Q9UPY3 1922 aaKnown RBP22.72■■□□□ 1.23
VIM-208ENST00000497849 BCL2L12Q9HB09 334 aa22.72■■□□□ 1.23
VIM-208ENST00000497849 NARFQ9UHQ1 456 aa22.72■■□□□ 1.23
VIM-208ENST00000497849 CARMIL3Q8ND23 1372 aa22.72■■□□□ 1.23
VIM-208ENST00000497849 SERPINB2P05120 415 aa22.71■■□□□ 1.23
VIM-208ENST00000497849 CYP19A1P11511 503 aaPredicted RBP22.7■■□□□ 1.22
VIM-208ENST00000497849 C2CD5Q86YS7 1000 aa22.7■■□□□ 1.22
VIM-208ENST00000497849 CREBZFQ9NS37 354 aa22.7■■□□□ 1.22
VIM-208ENST00000497849 MKRN1Q9UHC7 482 aaKnown RBP22.7■■□□□ 1.22
VIM-208ENST00000497849 COL15A1P39059 1388 aa22.69■■□□□ 1.22
VIM-208ENST00000497849 FER1L6Q2WGJ9 1857 aa22.68■■□□□ 1.22
VIM-208ENST00000497849 DPY19L2Q6NUT2 758 aa22.68■■□□□ 1.22
VIM-208ENST00000497849 ZBTB1Q9Y2K1 713 aa22.68■■□□□ 1.22
VIM-208ENST00000497849 ANKRD31Q8N7Z5 1873 aa22.68■■□□□ 1.22
VIM-208ENST00000497849 H0YIN7 160 aa22.67■■□□□ 1.22
VIM-208ENST00000497849 FOXN1O15353 648 aa22.67■■□□□ 1.22
VIM-208ENST00000497849 POTEIP0CG38 1075 aa22.66■■□□□ 1.22
VIM-208ENST00000497849 POTEJP0CG39 1038 aa22.66■■□□□ 1.22
VIM-208ENST00000497849 CHADLQ6NUI6 762 aa22.66■■□□□ 1.22
VIM-208ENST00000497849 VIRMAQ69YN4 1812 aaKnown RBP22.66■■□□□ 1.22
VIM-208ENST00000497849 SULT6B1Q6IMI4 303 aa22.65■■□□□ 1.22
VIM-208ENST00000497849 SLC52A2Q9HAB3 445 aa22.65■■□□□ 1.22
VIM-208ENST00000497849 SLC39A6Q13433 755 aa22.64■■□□□ 1.21
VIM-208ENST00000497849 ERFEQ4G0M1 354 aa22.64■■□□□ 1.21
VIM-208ENST00000497849 LGR6Q9HBX8 967 aa22.64■■□□□ 1.21
VIM-208ENST00000497849 COL11A2P13942 1736 aaPredicted RBP22.63■■□□□ 1.21
VIM-208ENST00000497849 MRC1P22897 1456 aa22.63■■□□□ 1.21
VIM-208ENST00000497849 PRDM10Q9NQV6 1147 aa22.63■■□□□ 1.21
VIM-208ENST00000497849 CNTNAP1P78357 1384 aa22.63■■□□□ 1.21
VIM-208ENST00000497849 C21orf2O43822 256 aa22.62■■□□□ 1.21
VIM-208ENST00000497849 AKAP4Q5JQC9 854 aa22.62■■□□□ 1.21
VIM-208ENST00000497849 SLC34A2O95436 690 aa22.61■■□□□ 1.21
VIM-208ENST00000497849 TRIM26Q12899 539 aaPredicted RBP22.61■■□□□ 1.21
VIM-208ENST00000497849 BICDL1Q6ZP65 573 aa22.61■■□□□ 1.21
VIM-208ENST00000497849 ZNF219Q9P2Y4 722 aaPredicted RBP22.61■■□□□ 1.21
VIM-208ENST00000497849 PASKQ96RG2 1323 aa22.6■■□□□ 1.21
VIM-208ENST00000497849 DDNO94850 711 aaPredicted RBP22.6■■□□□ 1.21
VIM-208ENST00000497849 ZNF622Q969S3 477 aaKnown RBP eCLIP22.6■■□□□ 1.21
VIM-208ENST00000497849 POLR3GLQ9BT43 218 aa22.59■■□□□ 1.21
VIM-208ENST00000497849 LTBP3Q9NS15 1303 aa22.58■■□□□ 1.21
VIM-208ENST00000497849 UBR2Q8IWV8 1755 aa22.58■■□□□ 1.21
VIM-208ENST00000497849 CANXP27824 592 aaKnown RBP22.58■■□□□ 1.21
VIM-208ENST00000497849 IL13P35225 146 aa22.58■■□□□ 1.21
VIM-208ENST00000497849 SLX4Q8IY92 1834 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 RNMTO43148 476 aaKnown RBP22.57■■□□□ 1.2
VIM-208ENST00000497849 EIF5P55010 431 aaKnown RBP22.57■■□□□ 1.2
VIM-208ENST00000497849 TBC1D9BQ66K14 1250 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 VSIG10Q8N0Z9 540 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 CCDC24Q8N4L8 307 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 BRIP1Q9BX63 1249 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 CACNA1SQ13698 1873 aa22.57■■□□□ 1.2
VIM-208ENST00000497849 CTCFP49711 727 aaPredicted RBP22.56■■□□□ 1.2
VIM-208ENST00000497849 PRR5LQ6MZQ0 368 aa22.56■■□□□ 1.2
VIM-208ENST00000497849 TAOK3Q9H2K8 898 aa22.56■■□□□ 1.2
VIM-208ENST00000497849 PDZRN3Q9UPQ7 1066 aa22.56■■□□□ 1.2
VIM-208ENST00000497849 SCN7AQ01118 1682 aa22.55■■□□□ 1.2
VIM-208ENST00000497849 SCN4AP35499 1836 aa22.55■■□□□ 1.2
VIM-208ENST00000497849 PDE6BP35913 854 aa22.55■■□□□ 1.2
VIM-208ENST00000497849 VEGFBP49765 207 aa22.55■■□□□ 1.2
VIM-208ENST00000497849 PANK3Q9H999 370 aa22.55■■□□□ 1.2
VIM-208ENST00000497849 LDHDQ86WU2 507 aa22.53■■□□□ 1.2
VIM-208ENST00000497849 AIDAQ96BJ3 306 aa22.53■■□□□ 1.2
VIM-208ENST00000497849 WBP1LQ9NX94 342 aa22.53■■□□□ 1.2
VIM-208ENST00000497849 ARFGEF2Q9Y6D5 1785 aa22.53■■□□□ 1.2
VIM-208ENST00000497849 ITGBL1O95965 494 aaPredicted RBP22.52■■□□□ 1.2
VIM-208ENST00000497849 MORC1Q86VD1 984 aa22.52■■□□□ 1.2
VIM-208ENST00000497849 TAF1DQ9H5J8 278 aaPredicted RBP22.52■■□□□ 1.2
VIM-208ENST00000497849 A0A087WZG4 1122 aa22.51■■□□□ 1.19
VIM-208ENST00000497849 LBX1P52954 281 aa22.51■■□□□ 1.19
VIM-208ENST00000497849 L3MBTL3Q96JM7 780 aaPredicted RBP22.51■■□□□ 1.19
VIM-208ENST00000497849 IQCA1LA6NCM1 817 aa22.5■■□□□ 1.19
VIM-208ENST00000497849 TMEM88BA6NKF7 163 aa22.5■■□□□ 1.19
VIM-208ENST00000497849 ADAMTSL1Q8N6G6 1762 aa22.49■■□□□ 1.19
VIM-208ENST00000497849 PRPF40BQ6NWY9 871 aaKnown RBP22.49■■□□□ 1.19
VIM-208ENST00000497849 CNKSR1Q969H4 720 aa22.49■■□□□ 1.19
VIM-208ENST00000497849 TBC1D2BQ9UPU7 963 aa22.49■■□□□ 1.19
VIM-208ENST00000497849 STARD3NLO95772 234 aa22.48■■□□□ 1.19
VIM-208ENST00000497849 SRGNP10124 158 aa22.48■■□□□ 1.19
VIM-208ENST00000497849 MTHFSDQ2M296 383 aaKnown RBP22.48■■□□□ 1.19
VIM-208ENST00000497849 STYK1Q6J9G0 422 aa22.48■■□□□ 1.19
VIM-208ENST00000497849 ABHD8Q96I13 439 aa22.47■■□□□ 1.19
VIM-208ENST00000497849 HMOX1P09601 288 aa22.46■■□□□ 1.19
VIM-208ENST00000497849 HSPA8P11142 646 aaKnown RBP22.46■■□□□ 1.19
VIM-208ENST00000497849 FAM161AQ3B820 660 aa22.46■■□□□ 1.19
VIM-208ENST00000497849 SOGA3Q5TF21 947 aa22.45■■□□□ 1.18
VIM-208ENST00000497849 CNBD1Q8NA66 436 aa22.45■■□□□ 1.18
VIM-208ENST00000497849 C7orf43Q8WVR3 580 aa22.45■■□□□ 1.18
VIM-208ENST00000497849 MASTLQ96GX5 879 aa22.45■■□□□ 1.18
VIM-208ENST00000497849 ZNF496Q96IT1 587 aaPredicted RBP22.45■■□□□ 1.18
VIM-208ENST00000497849 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms