RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TRIM50Q86XT4 487 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 TMEM151AQ8N4L1 468 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 ZDHHC1Q8WTX9 485 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 AIDAQ96BJ3 306 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 ABHD17AQ96GS6 310 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 OXCT2Q9BYC2 517 aaPredicted RBP7.02□□□□□ -1.29
CPSF3-205ENST00000489629 ZCCHC2Q9C0B9 1178 aaKnown RBP7.02□□□□□ -1.29
CPSF3-205ENST00000489629 ENAMQ9NRM1 1142 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 ZDHHC3Q9NYG2 299 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 CABP1Q9NZU7 370 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 HCN2Q9UL51 889 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 OIP5O43482 229 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 DKK1O94907 266 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 GDF11O95390 407 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 CTBSQ01459 385 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 PSME1Q06323 249 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 TEAD4Q15561 434 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 SCARF2Q96GP6 870 aaPredicted RBP7.01□□□□□ -1.29
CPSF3-205ENST00000489629 ZIC5Q96T25 663 aa7.01□□□□□ -1.29
CPSF3-205ENST00000489629 A0A1W2PNR3 127 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 A6NJR5 290 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 FGFR3P22607 806 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 IRS1P35568 1242 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 ATP1A2P50993 1020 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 NBPF1Q3BBV0 1214 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 CCDC102BQ68D86 513 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 FIGNL1Q6PIW4 674 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 KCTD17Q8N5Z5 321 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 GLMNQ92990 594 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 PCDHGC4Q9Y5F7 938 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 PARP3Q9Y6F1 533 aa7□□□□□ -1.29
CPSF3-205ENST00000489629 TXLNAP40222 546 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 KANK3Q6NY19 840 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 SLC9A9Q8IVB4 645 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 TNS4Q8IZW8 715 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 OGFOD1Q8N543 542 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 TPCN2Q8NHX9 752 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 C7orf43Q8WVR3 580 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 MKRN1Q9UHC7 482 aaKnown RBP6.99□□□□□ -1.29
CPSF3-205ENST00000489629 CNTNAP5Q8WYK1 1306 aa6.99□□□□□ -1.29
CPSF3-205ENST00000489629 SHISA8B8ZZ34 492 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 M0R2N6 131 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 ATXN7O15265 892 aaPredicted RBP6.98□□□□□ -1.29
CPSF3-205ENST00000489629 BMP4P12644 408 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 TATP17735 454 aaPredicted RBP6.98□□□□□ -1.29
CPSF3-205ENST00000489629 NOS2P35228 1153 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 TNP2Q05952 138 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 ARSJQ5FYB0 599 aaPredicted RBP6.98□□□□□ -1.29
CPSF3-205ENST00000489629 TBCELQ5QJ74 424 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 SIX5Q8N196 739 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 LARGE2Q8N3Y3 721 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 NEDD1Q8NHV4 660 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 L3MBTL2Q969R5 705 aa6.98□□□□□ -1.29
CPSF3-205ENST00000489629 TFIP11Q9UBB9 837 aaKnown RBP6.98□□□□□ -1.29
CPSF3-205ENST00000489629 GDF2Q9UK05 429 aaPredicted RBP6.98□□□□□ -1.29
CPSF3-205ENST00000489629 PALM3A6NDB9 673 aaPredicted RBP6.97□□□□□ -1.29
CPSF3-205ENST00000489629 EML1O00423 815 aa6.97□□□□□ -1.29
CPSF3-205ENST00000489629 MAPTP10636 758 aaKnown RBP6.97□□□□□ -1.29
CPSF3-205ENST00000489629 SH3PXD2AQ5TCZ1 1133 aa6.97□□□□□ -1.29
CPSF3-205ENST00000489629 SAMD5Q5TGI4 173 aa6.97□□□□□ -1.29
CPSF3-205ENST00000489629 POTEAQ6S8J7 498 aa6.97□□□□□ -1.29
CPSF3-205ENST00000489629 MAFBQ9Y5Q3 323 aaPredicted RBP6.97□□□□□ -1.29
CPSF3-205ENST00000489629 FAM157BP0CG42 384 aa6.96□□□□□ -1.3
CPSF3-205ENST00000489629 FAM182BQ5T319 152 aa6.96□□□□□ -1.3
CPSF3-205ENST00000489629 GOLGA6L1Q8N7Z2 621 aa6.96□□□□□ -1.3
CPSF3-205ENST00000489629 GALNT6Q8NCL4 622 aa6.96□□□□□ -1.3
CPSF3-205ENST00000489629 EDARADDQ8WWZ3 215 aa6.96□□□□□ -1.3
CPSF3-205ENST00000489629 DCDC2BA2VCK2 349 aa6.95□□□□□ -1.3
CPSF3-205ENST00000489629 ARAFP10398 606 aa6.95□□□□□ -1.3
CPSF3-205ENST00000489629 SLCO4C1Q6ZQN7 724 aa6.95□□□□□ -1.3
CPSF3-205ENST00000489629 BEND7Q8N7W2 519 aaPredicted RBP6.95□□□□□ -1.3
CPSF3-205ENST00000489629 TSPAN10Q9H1Z9 355 aaPredicted RBP6.95□□□□□ -1.3
CPSF3-205ENST00000489629 GGA1Q9UJY5 639 aa6.95□□□□□ -1.3
CPSF3-205ENST00000489629 DNMT3AQ9Y6K1 912 aaPredicted RBP6.95□□□□□ -1.3
CPSF3-205ENST00000489629 SERTM1A2A2V5 107 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 SFI1A8K8P3 1242 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 PHF20L1A8MW92 1017 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 KHNYNO15037 678 aaKnown RBP6.94□□□□□ -1.3
CPSF3-205ENST00000489629 EFSO43281 561 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 HOXB4P17483 251 aaPredicted RBP6.94□□□□□ -1.3
CPSF3-205ENST00000489629 HIRAP54198 1017 aaPredicted RBP6.94□□□□□ -1.3
CPSF3-205ENST00000489629 SNRPNP63162 240 aaKnown RBP6.94□□□□□ -1.3
CPSF3-205ENST00000489629 BICDL1Q6ZP65 573 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 PPP1R12CQ9BZL4 782 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 STRN4Q9NRL3 753 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 KLF15Q9UIH9 416 aa6.94□□□□□ -1.3
CPSF3-205ENST00000489629 GPC6Q9Y625 555 aaPredicted RBP6.94□□□□□ -1.3
CPSF3-205ENST00000489629 C21orf2O43822 256 aa6.93□□□□□ -1.3
CPSF3-205ENST00000489629 CD33P20138 364 aa6.93□□□□□ -1.3
CPSF3-205ENST00000489629 PSMA6P60900 246 aaKnown RBP6.93□□□□□ -1.3
CPSF3-205ENST00000489629 KANK4Q5T7N3 995 aaPredicted RBP6.93□□□□□ -1.3
CPSF3-205ENST00000489629 TSEN2Q8NCE0 465 aaKnown RBP6.93□□□□□ -1.3
CPSF3-205ENST00000489629 ZNF594Q96JF6 807 aaPredicted RBP6.93□□□□□ -1.3
CPSF3-205ENST00000489629 CALR3Q96L12 384 aaKnown RBP6.93□□□□□ -1.3
CPSF3-205ENST00000489629 EPXP11678 715 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 RASA1P20936 1047 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 LAMC2Q13753 1193 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 C1orf53Q5VUE5 145 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 PODNQ7Z5L7 613 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 AVENQ9NQS1 362 aaPredicted RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms