RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CCDC88AQ3V6T2 1871 aa22.26■■□□□ 1.15
USP48-210ENST00000489108 NFIXQ14938 502 aa22.26■■□□□ 1.15
USP48-210ENST00000489108 AFDNP55196 1824 aaKnown RBP22.25■■□□□ 1.15
USP48-210ENST00000489108 TTLL6Q8N841 843 aa22.24■■□□□ 1.15
USP48-210ENST00000489108 SOS1Q07889 1333 aaPredicted RBP22.24■■□□□ 1.15
USP48-210ENST00000489108 SULT6B1Q6IMI4 303 aa22.23■■□□□ 1.15
USP48-210ENST00000489108 NARFQ9UHQ1 456 aa22.23■■□□□ 1.15
USP48-210ENST00000489108 POTECB2RU33 542 aa22.22■■□□□ 1.15
USP48-210ENST00000489108 SERPINB2P05120 415 aa22.22■■□□□ 1.15
USP48-210ENST00000489108 CYP19A1P11511 503 aaPredicted RBP22.22■■□□□ 1.15
USP48-210ENST00000489108 SCN11AQ9UI33 1791 aa22.21■■□□□ 1.15
USP48-210ENST00000489108 C2CD5Q86YS7 1000 aa22.21■■□□□ 1.15
USP48-210ENST00000489108 NFKBIEO00221 500 aa22.2■■□□□ 1.14
USP48-210ENST00000489108 BCL2L12Q9HB09 334 aa22.2■■□□□ 1.14
USP48-210ENST00000489108 LGR6Q9HBX8 967 aa22.2■■□□□ 1.14
USP48-210ENST00000489108 SLC39A6Q13433 755 aa22.19■■□□□ 1.14
USP48-210ENST00000489108 SLC52A2Q9HAB3 445 aa22.19■■□□□ 1.14
USP48-210ENST00000489108 NRXN2Q9P2S2 1712 aa22.19■■□□□ 1.14
USP48-210ENST00000489108 DLEC1Q9Y238 1755 aa22.18■■□□□ 1.14
USP48-210ENST00000489108 H0YIN7 160 aa22.18■■□□□ 1.14
USP48-210ENST00000489108 PANK3Q9H999 370 aa22.18■■□□□ 1.14
USP48-210ENST00000489108 ZBTB1Q9Y2K1 713 aa22.18■■□□□ 1.14
USP48-210ENST00000489108 TIAM2Q8IVF5 1701 aa22.17■■□□□ 1.14
USP48-210ENST00000489108 COL15A1P39059 1388 aa22.17■■□□□ 1.14
USP48-210ENST00000489108 AKAP4Q5JQC9 854 aa22.17■■□□□ 1.14
USP48-210ENST00000489108 DPY19L2Q6NUT2 758 aa22.17■■□□□ 1.14
USP48-210ENST00000489108 CARMIL3Q8ND23 1372 aa22.15■■□□□ 1.14
USP48-210ENST00000489108 BICDL1Q6ZP65 573 aa22.15■■□□□ 1.14
USP48-210ENST00000489108 MORC1Q86VD1 984 aa22.15■■□□□ 1.14
USP48-210ENST00000489108 IL13P35225 146 aa22.14■■□□□ 1.13
USP48-210ENST00000489108 ZNF219Q9P2Y4 722 aaPredicted RBP22.14■■□□□ 1.13
USP48-210ENST00000489108 RNMTO43148 476 aaKnown RBP22.13■■□□□ 1.13
USP48-210ENST00000489108 CANXP27824 592 aaKnown RBP22.13■■□□□ 1.13
USP48-210ENST00000489108 ERFEQ4G0M1 354 aa22.13■■□□□ 1.13
USP48-210ENST00000489108 ZNF622Q969S3 477 aaKnown RBP eCLIP22.13■■□□□ 1.13
USP48-210ENST00000489108 MKRN1Q9UHC7 482 aaKnown RBP22.13■■□□□ 1.13
USP48-210ENST00000489108 C21orf2O43822 256 aa22.12■■□□□ 1.13
USP48-210ENST00000489108 CHADLQ6NUI6 762 aa22.11■■□□□ 1.13
USP48-210ENST00000489108 CREBZFQ9NS37 354 aa22.11■■□□□ 1.13
USP48-210ENST00000489108 DICER1Q9UPY3 1922 aaKnown RBP22.1■■□□□ 1.13
USP48-210ENST00000489108 CCDC24Q8N4L8 307 aa22.1■■□□□ 1.13
USP48-210ENST00000489108 POTEIP0CG38 1075 aa22.09■■□□□ 1.13
USP48-210ENST00000489108 POTEJP0CG39 1038 aa22.09■■□□□ 1.13
USP48-210ENST00000489108 VSIG10Q8N0Z9 540 aa22.09■■□□□ 1.13
USP48-210ENST00000489108 VIRMAQ69YN4 1812 aaKnown RBP22.08■■□□□ 1.13
USP48-210ENST00000489108 DDNO94850 711 aaPredicted RBP22.08■■□□□ 1.13
USP48-210ENST00000489108 EIF5P55010 431 aaKnown RBP22.08■■□□□ 1.13
USP48-210ENST00000489108 TBC1D9BQ66K14 1250 aa22.08■■□□□ 1.13
USP48-210ENST00000489108 BRIP1Q9BX63 1249 aa22.08■■□□□ 1.13
USP48-210ENST00000489108 FER1L6Q2WGJ9 1857 aa22.08■■□□□ 1.13
USP48-210ENST00000489108 ANKRD31Q8N7Z5 1873 aa22.08■■□□□ 1.13
USP48-210ENST00000489108 FOXN1O15353 648 aa22.07■■□□□ 1.12
USP48-210ENST00000489108 PDE6BP35913 854 aa22.07■■□□□ 1.12
USP48-210ENST00000489108 HMOX1P09601 288 aa22.06■■□□□ 1.12
USP48-210ENST00000489108 PDZRN3Q9UPQ7 1066 aa22.06■■□□□ 1.12
USP48-210ENST00000489108 MRC1P22897 1456 aa22.06■■□□□ 1.12
USP48-210ENST00000489108 A0A087WZG4 1122 aa22.05■■□□□ 1.12
USP48-210ENST00000489108 STARD3NLO95772 234 aa22.05■■□□□ 1.12
USP48-210ENST00000489108 MTHFSDQ2M296 383 aaKnown RBP22.05■■□□□ 1.12
USP48-210ENST00000489108 PRR5LQ6MZQ0 368 aa22.05■■□□□ 1.12
USP48-210ENST00000489108 TAOK3Q9H2K8 898 aa22.04■■□□□ 1.12
USP48-210ENST00000489108 TBC1D2BQ9UPU7 963 aa22.04■■□□□ 1.12
USP48-210ENST00000489108 TIMELESSQ9UNS1 1208 aa22.03■■□□□ 1.12
USP48-210ENST00000489108 LTBP3Q9NS15 1303 aa22.03■■□□□ 1.12
USP48-210ENST00000489108 CNTNAP1P78357 1384 aa22.02■■□□□ 1.12
USP48-210ENST00000489108 PRDM10Q9NQV6 1147 aa22.02■■□□□ 1.12
USP48-210ENST00000489108 SLX4Q8IY92 1834 aa22.01■■□□□ 1.11
USP48-210ENST00000489108 COL11A2P13942 1736 aaPredicted RBP22.01■■□□□ 1.11
USP48-210ENST00000489108 HSPA5P11021 654 aaKnown RBP22.01■■□□□ 1.11
USP48-210ENST00000489108 ZNF330Q9Y3S2 320 aaPredicted RBP22.01■■□□□ 1.11
USP48-210ENST00000489108 UBR2Q8IWV8 1755 aa22■■□□□ 1.11
USP48-210ENST00000489108 TTC5Q8N0Z6 440 aa22■■□□□ 1.11
USP48-210ENST00000489108 CNKSR1Q969H4 720 aa22■■□□□ 1.11
USP48-210ENST00000489108 KNSTRNQ9Y448 316 aa22■■□□□ 1.11
USP48-210ENST00000489108 PASKQ96RG2 1323 aa22■■□□□ 1.11
USP48-210ENST00000489108 EIF4G2P78344 907 aaKnown RBP eCLIP21.99■■□□□ 1.11
USP48-210ENST00000489108 ZNF496Q96IT1 587 aaPredicted RBP21.99■■□□□ 1.11
USP48-210ENST00000489108 CACNA1SQ13698 1873 aa21.98■■□□□ 1.11
USP48-210ENST00000489108 CTCFP49711 727 aaPredicted RBP21.98■■□□□ 1.11
USP48-210ENST00000489108 VEGFBP49765 207 aa21.98■■□□□ 1.11
USP48-210ENST00000489108 STYK1Q6J9G0 422 aa21.98■■□□□ 1.11
USP48-210ENST00000489108 PRPF40BQ6NWY9 871 aaKnown RBP21.98■■□□□ 1.11
USP48-210ENST00000489108 LDHDQ86WU2 507 aa21.98■■□□□ 1.11
USP48-210ENST00000489108 SETDB2Q96T68 719 aa21.98■■□□□ 1.11
USP48-210ENST00000489108 TAF1DQ9H5J8 278 aaPredicted RBP21.98■■□□□ 1.11
USP48-210ENST00000489108 IQCA1LA6NCM1 817 aa21.97■■□□□ 1.11
USP48-210ENST00000489108 SRGNP10124 158 aa21.97■■□□□ 1.11
USP48-210ENST00000489108 CNBD1Q8NA66 436 aa21.97■■□□□ 1.11
USP48-210ENST00000489108 AIDAQ96BJ3 306 aa21.97■■□□□ 1.11
USP48-210ENST00000489108 NPHP1O15259 732 aa21.96■■□□□ 1.11
USP48-210ENST00000489108 ITGBL1O95965 494 aaPredicted RBP21.96■■□□□ 1.11
USP48-210ENST00000489108 A1BGP04217 495 aa21.96■■□□□ 1.11
USP48-210ENST00000489108 IL6STP40189 918 aaPredicted RBP21.96■■□□□ 1.11
USP48-210ENST00000489108 MASTLQ96GX5 879 aa21.96■■□□□ 1.11
USP48-210ENST00000489108 TEX13AQ9BXU3 409 aaPredicted RBP21.96■■□□□ 1.11
USP48-210ENST00000489108 HEG1Q9ULI3 1381 aa21.96■■□□□ 1.11
USP48-210ENST00000489108 TMEM88BA6NKF7 163 aa21.95■■□□□ 1.1
USP48-210ENST00000489108 SOGA3Q5TF21 947 aa21.95■■□□□ 1.1
USP48-210ENST00000489108 ZNF790Q6PG37 636 aa21.95■■□□□ 1.1
USP48-210ENST00000489108 L3MBTL3Q96JM7 780 aaPredicted RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms