RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ATXN7L1Q9ULK2 861 aaPredicted RBP8.48□□□□□ -1.05
VPS29-202ENST00000447578 TMEM229AB2RXF0 380 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 FGFR3P22607 806 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 SMTNP53814 917 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 TBC1D9Q6ZT07 1266 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 EDARADDQ8WWZ3 215 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 USP3Q9Y6I4 520 aa8.47□□□□□ -1.05
VPS29-202ENST00000447578 ATP4AP20648 1035 aa8.46□□□□□ -1.06
VPS29-202ENST00000447578 ITGB7P26010 798 aa8.46□□□□□ -1.06
VPS29-202ENST00000447578 NIFKQ9BYG3 293 aaKnown RBP8.46□□□□□ -1.06
VPS29-202ENST00000447578 ZCCHC2Q9C0B9 1178 aaKnown RBP8.46□□□□□ -1.06
VPS29-202ENST00000447578 RRAGCQ9HB90 399 aa8.46□□□□□ -1.06
VPS29-202ENST00000447578 DNAAF2Q9NVR5 837 aaKnown RBP8.46□□□□□ -1.06
VPS29-202ENST00000447578 COG6Q9Y2V7 657 aa8.46□□□□□ -1.06
VPS29-202ENST00000447578 GGA1Q9UJY5 639 aa8.45□□□□□ -1.06
VPS29-202ENST00000447578 GDF2Q9UK05 429 aaPredicted RBP8.45□□□□□ -1.06
VPS29-202ENST00000447578 HCN2Q9UL51 889 aa8.45□□□□□ -1.06
VPS29-202ENST00000447578 ZNF295-AS1Q8N0V1 137 aa8.44□□□□□ -1.06
VPS29-202ENST00000447578 GOLGA6L1Q8N7Z2 621 aa8.44□□□□□ -1.06
VPS29-202ENST00000447578 SEMA6BQ9H3T3 888 aa8.44□□□□□ -1.06
VPS29-202ENST00000447578 PCDHGA11Q9Y5H2 935 aa8.44□□□□□ -1.06
VPS29-202ENST00000447578 SCO2A0A1W2PP80 73 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 SOX11P35716 441 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 SLC4A9Q96Q91 983 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 MKL2Q9ULH7 1088 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 IQSEC3Q9UPP2 1182 aaPredicted RBP8.43□□□□□ -1.06
VPS29-202ENST00000447578 PCDHGC4Q9Y5F7 938 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 PARP3Q9Y6F1 533 aa8.43□□□□□ -1.06
VPS29-202ENST00000447578 A0A1W2PNR3 127 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 DCDC2BA2VCK2 349 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 A6NJY4 79 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 SKIP12755 728 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 HOXB4P17483 251 aaPredicted RBP8.42□□□□□ -1.06
VPS29-202ENST00000447578 AMPD1P23109 780 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 COL8A1P27658 744 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 MTFR1Q15390 333 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 ARSJQ5FYB0 599 aaPredicted RBP8.42□□□□□ -1.06
VPS29-202ENST00000447578 POM121Q96HA1 1249 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 KRTAP4-7Q9BYR0 210 aa8.42□□□□□ -1.06
VPS29-202ENST00000447578 NEURL1BA8MQ27 555 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 CDK2AP1O14519 115 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 ATXN7O15265 892 aaPredicted RBP8.41□□□□□ -1.06
VPS29-202ENST00000447578 FIGNL1Q6PIW4 674 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 NLRP8Q86W28 1048 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 C1orf216Q8TAB5 229 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 ALG2Q9H553 416 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 SUV39H2Q9H5I1 410 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 CABP1Q9NZU7 370 aa8.41□□□□□ -1.06
VPS29-202ENST00000447578 CD33P20138 364 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 EML3Q32P44 896 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 LINC00114Q6XXX2 140 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 SLCO4C1Q6ZQN7 724 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 DEPDC4Q8N2C3 294 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS29-202ENST00000447578 BTBD6Q96KE9 485 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 ZIC5Q96T25 663 aa8.4□□□□□ -1.06
VPS29-202ENST00000447578 MAPTP10636 758 aaKnown RBP8.39□□□□□ -1.07
VPS29-202ENST00000447578 EPXP11678 715 aa8.39□□□□□ -1.07
VPS29-202ENST00000447578 TNP2Q05952 138 aa8.39□□□□□ -1.07
VPS29-202ENST00000447578 NBPF1Q3BBV0 1214 aa8.39□□□□□ -1.07
VPS29-202ENST00000447578 KLF15Q9UIH9 416 aa8.39□□□□□ -1.07
VPS29-202ENST00000447578 KHNYNO15037 678 aaKnown RBP8.38□□□□□ -1.07
VPS29-202ENST00000447578 ARAFP10398 606 aa8.38□□□□□ -1.07
VPS29-202ENST00000447578 TXLNAP40222 546 aa8.38□□□□□ -1.07
VPS29-202ENST00000447578 GTF2IP78347 998 aa8.38□□□□□ -1.07
VPS29-202ENST00000447578 NCOA4Q13772 614 aa8.38□□□□□ -1.07
VPS29-202ENST00000447578 NOD1Q9Y239 953 aa8.38□□□□□ -1.07
VPS29-202ENST00000447578 C1QTNF9BB2RNN3 333 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 TATP17735 454 aaPredicted RBP8.37□□□□□ -1.07
VPS29-202ENST00000447578 PSME1Q06323 249 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 GRIN2CQ14957 1233 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 ZDHHC1Q8WTX9 485 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 ZNF358Q9NW07 568 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 ZDHHC3Q9NYG2 299 aa8.37□□□□□ -1.07
VPS29-202ENST00000447578 TBCELQ5QJ74 424 aa8.36□□□□□ -1.07
VPS29-202ENST00000447578 ZFP64Q9NPA5 681 aa8.36□□□□□ -1.07
VPS29-202ENST00000447578 STRN4Q9NRL3 753 aa8.36□□□□□ -1.07
VPS29-202ENST00000447578 SCHIP1Q9P0W5 487 aaPredicted RBP8.36□□□□□ -1.07
VPS29-202ENST00000447578 POM121CA8CG34 1229 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 BACH1O14867 736 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 PCBP4P57723 403 aaKnown RBP8.35□□□□□ -1.07
VPS29-202ENST00000447578 BICDL1Q6ZP65 573 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 NBPF11Q86T75 865 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 FCHSD1Q86WN1 690 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 GJA3Q9Y6H8 435 aa8.35□□□□□ -1.07
VPS29-202ENST00000447578 USP17L5A8MUK1 530 aa8.34□□□□□ -1.07
VPS29-202ENST00000447578 TNS4Q8IZW8 715 aa8.34□□□□□ -1.07
VPS29-202ENST00000447578 ADAMTS19Q8TE59 1207 aa8.34□□□□□ -1.07
VPS29-202ENST00000447578 L3MBTL2Q969R5 705 aa8.34□□□□□ -1.07
VPS29-202ENST00000447578 ADH6P28332 368 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 DGKGP49619 791 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 FAM182BQ5T319 152 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 LCE1DQ5T752 114 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 CHSY3Q70JA7 882 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 CD163Q86VB7 1156 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 NFATC2IPQ8NCF5 419 aa8.33□□□□□ -1.08
VPS29-202ENST00000447578 GNB5O14775 395 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 LZTS3O60299 673 aaPredicted RBP8.32□□□□□ -1.08
VPS29-202ENST00000447578 FAM157BP0CG42 384 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 NOS2P35228 1153 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms