RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 DDX12PQ92771 950 aa9.73□□□□□ -0.85
SPTLC3-201ENST00000399002 GCOM1H8Y6P7 765 aaPredicted RBP9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 USO1O60763 962 aaKnown RBP9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 MYZAPP0CAP1 466 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 MYL6BP14649 208 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 LRP2BPQ9P2M1 347 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 ARHGAP45Q92619 1136 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 MTMR7Q9Y216 660 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 DCAF8L1A6NGE4 600 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 PPP4R3BQ5MIZ7 849 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 AMPD3Q01432 767 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 MAP3K12Q12852 859 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 BMP2KLQ5H9B9 411 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 PPP4R3AQ6IN85 833 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 EHBP1Q8NDI1 1231 aa9.72□□□□□ -0.85
SPTLC3-201ENST00000399002 YEATS4O95619 227 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 CFAP100Q494V2 611 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 CRACR2AQ9BSW2 395 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 TMOD2Q9NZR1 351 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 GTPBP4Q9BZE4 634 aaKnown RBP9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 CD109Q6YHK3 1445 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 METTL24Q5JXM2 366 aa9.71□□□□□ -0.85
SPTLC3-201ENST00000399002 TOP1P11387 765 aaKnown RBP9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 ALS2CR12Q96Q35 445 aa9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 NAA15Q9BXJ9 866 aaKnown RBP9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 CFAP43Q8NDM7 1665 aa9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 C8orf76Q96K31 380 aa9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 STRN4Q9NRL3 753 aa9.71□□□□□ -0.86
SPTLC3-201ENST00000399002 MPHOSPH10O00566 681 aaKnown RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 POLR3GO15318 223 aaPredicted RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 KDM4AO75164 1064 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 SAMD1Q6SPF0 538 aaPredicted RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 UGGT2Q9NYU1 1516 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 SYCE3A1L190 88 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 BMP15O95972 392 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 ZSCAN16Q9H4T2 348 aaPredicted RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 GOLGA6L10A0A0M3HER8 536 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 PRPF40BQ6NWY9 871 aaKnown RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 STXBP4Q6ZWJ1 553 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 CUL5Q93034 780 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 CCDC102AQ96A19 550 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 ZHX3Q9H4I2 956 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 CTCFLQ8NI51 663 aaPredicted RBP9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 CLIP2Q9UDT6 1046 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 PAXBP1Q9Y5B6 917 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 GOLIM4O00461 696 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 NUTM1Q86Y26 1132 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 DNAAF4Q8WXU2 420 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 RMND1Q9NWS8 449 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 SLC12A7Q9Y666 1083 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 CCDC171Q6TFL3 1326 aa9.7□□□□□ -0.86
SPTLC3-201ENST00000399002 BAG4O95429 457 aaKnown RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 HDAC1Q13547 482 aaPredicted RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 TAOK3Q9H2K8 898 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 TMOD3Q9NYL9 352 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 TUBB4BP68371 445 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 IFI16Q16666 785 aaKnown RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 PRIMPOLQ96LW4 560 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 DBF4Q9UBU7 674 aaPredicted RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 SOS1Q07889 1333 aaPredicted RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 RRS1Q15050 365 aaKnown RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 IQCA1Q86XH1 822 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 SEPT11Q9NVA2 429 aaKnown RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 SF3B2Q13435 895 aaKnown RBP9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 NAPBQ9H115 298 aa9.69□□□□□ -0.86
SPTLC3-201ENST00000399002 DENND4BO75064 1496 aaPredicted RBP9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 ANKRD18BA2A2Z9 1011 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 ZNF213O14771 459 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 KIF5BP33176 963 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 RBM10P98175 930 aaKnown RBP9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 GIGYF2Q6Y7W6 1299 aaKnown RBP9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 ANAPC15P60006 121 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 CATIPQ7Z7H3 387 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 PUS7Q96PZ0 661 aaKnown RBP9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 USP5P45974 858 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 CALCOCO1Q9P1Z2 691 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 ZFYVE9O95405 1425 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 TTC21AQ8NDW8 1320 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 UBE2HP62256 183 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 TTC22Q5TAA0 569 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 FAM177BA6PVY3 158 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 WASLO00401 505 aaPredicted RBP9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 CTAGE1Q96RT6 745 aa9.68□□□□□ -0.86
SPTLC3-201ENST00000399002 IDH1O75874 414 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 IFIT5Q13325 482 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 SKIDA1Q1XH10 827 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 SPTY2D1Q68D10 685 aaPredicted RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 SSH1Q8WYL5 1049 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 IL1RAPL2Q9NP60 686 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 PRDM11Q9NQV5 511 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 GOLGA8AA7E2F4 631 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 GOLGA8BA8MQT2 603 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 NEBLO76041 1014 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 PAFAH1B1P43034 410 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 MATR3P43243 847 aaKnown RBP eCLIP9.67□□□□□ -0.869e-11■■■■■ 28.9
SPTLC3-201ENST00000399002 GSTO1P78417 241 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 MYD88Q99836 296 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 CCDC172P0C7W6 258 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 RBM5P52756 815 aaKnown RBP eCLIP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 156.6 ms