RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 ACBD3Q9H3P7 528 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 TMPRSS4Q9NRS4 437 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ZNF358Q9NW07 568 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 SERTAD1Q9UHV2 236 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ZC3H6P61129 1189 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ZNF326Q5BKZ1 582 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 SCG3Q8WXD2 468 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 DUSP9Q99956 384 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 RAB6BQ9NRW1 208 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 LRFN2Q9ULH4 789 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 A6NHS1 94 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 VARSP26640 1264 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 EAPPQ56P03 285 aaPredicted RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ZNF697Q5TEC3 545 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 PIK3R5Q8WYR1 880 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 PARP2Q9UGN5 583 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 GRNP28799 593 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ATP1A2P50993 1020 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 MAP7D1Q3KQU3 841 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 ZNF394Q53GI3 561 aa2.52□□□□□ -2.01
BRCA1-202ENST00000354071 INTS6LQ5JSJ4 861 aaKnown RBP2.52□□□□□ -2.01
BRCA1-202ENST00000354071 LOC100996750A0A140TA64 210 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 NRG2O14511 850 aaPredicted RBP2.51□□□□□ -2.01
BRCA1-202ENST00000354071 FZD6O60353 706 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 DPH6Q7L8W6 267 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 RGL4Q8IZJ4 473 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 MDFIQ99750 246 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 KRTAP4-6Q9BYQ5 205 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 EGFL7Q9UHF1 273 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 GOLGA8CPA6NN73 597 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TNFRSF10BO14763 440 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 ERCC3P19447 782 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 SLC4A3P48751 1232 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 FANCCQ00597 558 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 NBPF14Q5TI25 921 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 PI16Q6UXB8 463 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TRIM50Q86XT4 487 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 HELQQ8TDG4 1101 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TMC1Q8TDI8 760 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 BRPF3Q9ULD4 1205 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TREHO43280 583 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 EIF1AXP47813 144 aaKnown RBP2.51□□□□□ -2.01
BRCA1-202ENST00000354071 COX20Q5RI15 118 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TMEM87AQ8NBN3 555 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 ITPKCQ96DU7 683 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 TINF2Q9BSI4 451 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 PIF1Q9H611 641 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 CYLDQ9NQC7 956 aa2.51□□□□□ -2.01
BRCA1-202ENST00000354071 ERVH48-1M5A8F1 160 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 SNIP1Q8TAD8 396 aaKnown RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 F6X3S4 739 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 LDHBP07195 334 aaKnown RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 CTSHP09668 335 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 VAMP1P23763 118 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 EHHADHQ08426 723 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 SPATA32Q96LK8 384 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 C8orf37Q96NL8 207 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 CFHR5Q9BXR6 569 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 ETNK1Q9HBU6 452 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 EMILIN1Q9Y6C2 1016 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 PARP3Q9Y6F1 533 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 SOS2Q07890 1332 aaPredicted RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 FMR1Q06787 632 aaKnown RBP eCLIP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 ORC1Q13415 861 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 DSC3Q14574 896 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 MTFR1Q15390 333 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 SLC10A4Q96EP9 437 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 LNPKQ9C0E8 428 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 QTRT2Q9H974 415 aaKnown RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 IL2RAP01589 272 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 RACK1P63244 317 aaKnown RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 AAMPQ13685 434 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 ZNF784Q8NCA9 323 aaPredicted RBP2.5□□□□□ -2.01
BRCA1-202ENST00000354071 SLC4A9Q96Q91 983 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 TANGO6Q9C0B7 1094 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 NIF3L1Q9GZT8 377 aa2.5□□□□□ -2.01
BRCA1-202ENST00000354071 ST8SIA5O15466 376 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 DNAJA1P31689 397 aaKnown RBP2.49□□□□□ -2.01
BRCA1-202ENST00000354071 NGLY1Q96IV0 654 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 CAPN10Q9HC96 672 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 TNFRSF10AO00220 468 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 IRS1P35568 1242 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 GDF10P55107 478 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 ETFBKMTQ8IXQ9 262 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 MEIOBQ8N635 442 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 USP20Q9Y2K6 914 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 GTF2F1P35269 517 aaKnown RBP eCLIP2.49□□□□□ -2.014e-8■■■□□ 16.5
BRCA1-202ENST00000354071 ZSCAN29Q8IWY8 852 aaPredicted RBP2.49□□□□□ -2.01
BRCA1-202ENST00000354071 KCTD15Q96SI1 283 aaPredicted RBP2.49□□□□□ -2.01
BRCA1-202ENST00000354071 PRKAG2Q9UGJ0 569 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 ARHGEF11O15085 1522 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 ATAD2Q6PL18 1390 aa2.49□□□□□ -2.01
BRCA1-202ENST00000354071 SCAMP3O14828 347 aaKnown RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 ARID5BQ14865 1188 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 NBPF20Q3BBV1 942 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 PMFBP1Q8TBY8 1022 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 UBXN4Q92575 508 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 RBCK1Q9BYM8 510 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 KLK14Q9P0G3 267 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 POLIQ9UNA4 740 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms