RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CRYBG1Q9Y4K1 1723 aa19.33■□□□□ 0.68
HMGA1-202ENST00000347617 REC8O95072 547 aa19.32■□□□□ 0.68
HMGA1-202ENST00000347617 MCM2P49736 904 aa19.32■□□□□ 0.68
HMGA1-202ENST00000347617 DDX17Q92841 729 aaKnown RBP19.32■□□□□ 0.68
HMGA1-202ENST00000347617 SYAP1Q96A49 352 aaPredicted RBP19.32■□□□□ 0.68
HMGA1-202ENST00000347617 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.32■□□□□ 0.68
HMGA1-202ENST00000347617 AXIN2Q9Y2T1 843 aa19.32■□□□□ 0.68
HMGA1-202ENST00000347617 ERBB3P21860 1342 aa19.32■□□□□ 0.68
HMGA1-202ENST00000347617 COL18A1P39060 1754 aa19.32■□□□□ 0.68
HMGA1-202ENST00000347617 LMO7Q8WWI1 1683 aa19.31■□□□□ 0.68
HMGA1-202ENST00000347617 PRIM1P49642 420 aaKnown RBP19.31■□□□□ 0.68
HMGA1-202ENST00000347617 CEMIPQ8WUJ3 1361 aa19.3■□□□□ 0.68
HMGA1-202ENST00000347617 GSPT1P15170 499 aaKnown RBP19.3■□□□□ 0.68
HMGA1-202ENST00000347617 AKAP4Q5JQC9 854 aa19.3■□□□□ 0.68
HMGA1-202ENST00000347617 SIRT2Q8IXJ6 389 aa19.3■□□□□ 0.68
HMGA1-202ENST00000347617 IL17REQ8NFR9 667 aa19.3■□□□□ 0.68
HMGA1-202ENST00000347617 FAM13BQ9NYF5 915 aa19.3■□□□□ 0.68
HMGA1-202ENST00000347617 ZC3H6P61129 1189 aaKnown RBP19.29■□□□□ 0.68
HMGA1-202ENST00000347617 TAF7Q15545 349 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-202ENST00000347617 OVOS2A0A0G2JMS6 1433 aa19.29■□□□□ 0.68
HMGA1-202ENST00000347617 ZBTB7CA1YPR0 619 aa19.29■□□□□ 0.68
HMGA1-202ENST00000347617 PHF14O94880 888 aa19.29■□□□□ 0.68
HMGA1-202ENST00000347617 USHBP1Q8N6Y0 703 aa19.29■□□□□ 0.68
HMGA1-202ENST00000347617 FAM208AQ9UK61 1670 aaKnown RBP19.28■□□□□ 0.68
HMGA1-202ENST00000347617 PRPF40AO75400 957 aaKnown RBP19.28■□□□□ 0.68
HMGA1-202ENST00000347617 RPAP2Q8IXW5 612 aaPredicted RBP19.28■□□□□ 0.68
HMGA1-202ENST00000347617 LRRC59Q96AG4 307 aaKnown RBP19.28■□□□□ 0.68
HMGA1-202ENST00000347617 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.28■□□□□ 0.68
HMGA1-202ENST00000347617 TSPYL4Q9UJ04 414 aa19.28■□□□□ 0.68
HMGA1-202ENST00000347617 PRDM4Q9UKN5 801 aa19.28■□□□□ 0.68
HMGA1-202ENST00000347617 RBM10P98175 930 aaKnown RBP19.27■□□□□ 0.68
HMGA1-202ENST00000347617 UVSSAQ2YD98 709 aa19.27■□□□□ 0.68
HMGA1-202ENST00000347617 GPT2Q8TD30 523 aa19.27■□□□□ 0.68
HMGA1-202ENST00000347617 RGPD2P0DJD1 1756 aa19.27■□□□□ 0.68
HMGA1-202ENST00000347617 KIAA2012Q0VF49 1180 aa19.27■□□□□ 0.67
HMGA1-202ENST00000347617 FAM184AQ8NB25 1140 aa19.27■□□□□ 0.67
HMGA1-202ENST00000347617 PRIMPOLQ96LW4 560 aa19.27■□□□□ 0.67
HMGA1-202ENST00000347617 CHMP4AQ9BY43 222 aa19.27■□□□□ 0.67
HMGA1-202ENST00000347617 NHSL1Q5SYE7 1610 aa19.26■□□□□ 0.67
HMGA1-202ENST00000347617 HMGN5P82970 282 aaKnown RBP19.26■□□□□ 0.67
HMGA1-202ENST00000347617 ANKRD44Q8N8A2 993 aa19.25■□□□□ 0.67
HMGA1-202ENST00000347617 RGPD5Q99666 1765 aa19.25■□□□□ 0.67
HMGA1-202ENST00000347617 ELL2O00472 640 aaPredicted RBP19.24■□□□□ 0.67
HMGA1-202ENST00000347617 UTP14CQ5TAP6 766 aaKnown RBP19.24■□□□□ 0.67
HMGA1-202ENST00000347617 TSPY26PQ9H489 355 aa19.24■□□□□ 0.67
HMGA1-202ENST00000347617 C1orf115Q9H7X2 142 aa19.24■□□□□ 0.67
HMGA1-202ENST00000347617 PTPRCP08575 1304 aa19.23■□□□□ 0.67
HMGA1-202ENST00000347617 ERC2O15083 957 aa19.23■□□□□ 0.67
HMGA1-202ENST00000347617 MYRIPQ8NFW9 859 aa19.23■□□□□ 0.67
HMGA1-202ENST00000347617 INTS4Q96HW7 963 aaKnown RBP19.23■□□□□ 0.67
HMGA1-202ENST00000347617 CCDC94Q9BW85 323 aaPredicted RBP19.23■□□□□ 0.67
HMGA1-202ENST00000347617 TMEM63CQ9P1W3 806 aa19.23■□□□□ 0.67
HMGA1-202ENST00000347617 C1orf141Q5JVX7 400 aa19.22■□□□□ 0.67
HMGA1-202ENST00000347617 ZNF530Q6P9A1 599 aaPredicted RBP19.22■□□□□ 0.67
HMGA1-202ENST00000347617 CABLES1Q8TDN4 633 aa19.22■□□□□ 0.67
HMGA1-202ENST00000347617 ZDHHC9Q9Y397 364 aa19.22■□□□□ 0.67
HMGA1-202ENST00000347617 RAPGEF4Q8WZA2 1011 aa19.21■□□□□ 0.67
HMGA1-202ENST00000347617 ATP10DQ9P241 1426 aa19.21■□□□□ 0.67
HMGA1-202ENST00000347617 HOXB7P09629 217 aa19.21■□□□□ 0.67
HMGA1-202ENST00000347617 SYCE3A1L190 88 aa19.2■□□□□ 0.66
HMGA1-202ENST00000347617 BRD1O95696 1058 aa19.2■□□□□ 0.66
HMGA1-202ENST00000347617 PTMAP06454 111 aaKnown RBP19.2■□□□□ 0.66
HMGA1-202ENST00000347617 GTF2F1P35269 517 aaKnown RBP eCLIP19.2■□□□□ 0.66
HMGA1-202ENST00000347617 LETM1O95202 739 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-202ENST00000347617 TATP17735 454 aaPredicted RBP19.19■□□□□ 0.66
HMGA1-202ENST00000347617 MCCP23508 829 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 ANAPC15P60006 121 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 CUL4AQ13619 759 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 OSBPL3Q9H4L5 887 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 NLRP2Q9NX02 1062 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 MIS18AQ9NYP9 233 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 RBM27Q9P2N5 1060 aaKnown RBP19.19■□□□□ 0.66
HMGA1-202ENST00000347617 SPG7Q9UQ90 795 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 ADAMTS7Q9UKP4 1686 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 LTBP4Q8N2S1 1624 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 RNMTO43148 476 aaKnown RBP19.19■□□□□ 0.66
HMGA1-202ENST00000347617 EPB41L2O43491 1005 aaKnown RBP19.19■□□□□ 0.66
HMGA1-202ENST00000347617 SDSP20132 328 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 TUBGCP6Q96RT7 1819 aa19.19■□□□□ 0.66
HMGA1-202ENST00000347617 CACNA1FO60840 1977 aa19.18■□□□□ 0.66
HMGA1-202ENST00000347617 PLEKHG5O94827 1062 aa19.18■□□□□ 0.66
HMGA1-202ENST00000347617 CCDC30Q5VVM6 783 aa19.18■□□□□ 0.66
HMGA1-202ENST00000347617 IL17RAQ96F46 866 aa19.18■□□□□ 0.66
HMGA1-202ENST00000347617 TEFQ10587 303 aa19.17■□□□□ 0.66
HMGA1-202ENST00000347617 PKP1Q13835 747 aa19.17■□□□□ 0.66
HMGA1-202ENST00000347617 KRT24Q2M2I5 525 aa19.17■□□□□ 0.66
HMGA1-202ENST00000347617 ZGPATQ8N5A5 531 aaKnown RBP19.17■□□□□ 0.66
HMGA1-202ENST00000347617 LGR6Q9HBX8 967 aa19.17■□□□□ 0.66
HMGA1-202ENST00000347617 HMMRO75330 724 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 CSB-PGBD3P0DP91 1061 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 PIBF1Q8WXW3 757 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 PRDM11Q9NQV5 511 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 WDR17Q8IZU2 1322 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 CHRNA2Q15822 529 aa19.16■□□□□ 0.66
HMGA1-202ENST00000347617 AHDC1Q5TGY3 1603 aaPredicted RBP19.15■□□□□ 0.66
HMGA1-202ENST00000347617 SLC4A2P04920 1241 aa19.15■□□□□ 0.66
HMGA1-202ENST00000347617 TPM3P06753 285 aa19.15■□□□□ 0.66
HMGA1-202ENST00000347617 STK31Q9BXU1 1019 aa19.15■□□□□ 0.66
HMGA1-202ENST00000347617 KDM3BQ7LBC6 1761 aa19.15■□□□□ 0.66
HMGA1-202ENST00000347617 ABCA3Q99758 1704 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms