RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 SPC24Q8NBT2 197 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 TCP11Q8WWU5 503 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 CCDC34Q96HJ3 373 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 ZNF396Q96N95 335 aaPredicted RBP10.06□□□□□ -0.8
TDP1-201ENST00000335725 SRRTQ9BXP5 876 aaKnown RBP10.06□□□□□ -0.8
TDP1-201ENST00000335725 RMI1Q9H9A7 625 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 ZNF232Q9UNY5 417 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 EXOC6BQ9Y2D4 811 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 CHUKO15111 745 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 SDR16C5Q8N3Y7 309 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 ODF2LQ9ULJ1 636 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 NKTRP30414 1462 aaKnown RBP10.06□□□□□ -0.8
TDP1-201ENST00000335725 WIZO95785 1651 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 PCDHGA4Q9Y5G9 962 aa10.06□□□□□ -0.8
TDP1-201ENST00000335725 ROCK1Q13464 1354 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 PARD3Q8TEW0 1356 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 SCAF11Q99590 1463 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 GPTP24298 496 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 SLFN5Q08AF3 891 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 CDC37Q16543 378 aaPredicted RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 FOXD4L6Q3SYB3 417 aaPredicted RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 FOXD4L3Q6VB84 417 aaPredicted RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 RBM12BQ8IXT5 1001 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 MICAL1Q8TDZ2 1067 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 UBXN4Q92575 508 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 IQCGQ9H095 443 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 COG6Q9Y2V7 657 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 NAIPQ13075 1403 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 TPD52L2O43399 206 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 PTGS1P23219 599 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 SCRN1Q12765 414 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 TBC1D25Q3MII6 688 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 ARHGAP29Q52LW3 1261 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 SPTY2D1Q68D10 685 aaPredicted RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 CCNHP51946 323 aaPredicted RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 DRC7Q8IY82 874 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 KCNB2Q92953 911 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 CABS1Q96KC9 395 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 THUMPD2Q9BTF0 503 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 MMTAG2Q9BU76 263 aaKnown RBP10.05□□□□□ -0.8
TDP1-201ENST00000335725 STK31Q9BXU1 1019 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 MYO6Q9UM54 1294 aa10.05□□□□□ -0.8
TDP1-201ENST00000335725 PTPN23Q9H3S7 1636 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 PPFIA4O75335 1185 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 HHATQ5VTY9 493 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.04□□□□□ -0.8
TDP1-201ENST00000335725 NCAPG2Q86XI2 1143 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 PRPF38AQ8NAV1 312 aaKnown RBP10.04□□□□□ -0.8
TDP1-201ENST00000335725 HOMER3Q9NSC5 361 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 PHF8Q9UPP1 1060 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 AP1G2O75843 785 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 ECEL1O95672 775 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 SKILP12757 684 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 HCLS1P14317 486 aaPredicted RBP10.04□□□□□ -0.8
TDP1-201ENST00000335725 LRRC31Q6UY01 552 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 CADPS2Q86UW7 1296 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 ERCC6LQ2NKX8 1250 aa10.04□□□□□ -0.8
TDP1-201ENST00000335725 ARHGAP35Q9NRY4 1499 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 ATAD2Q6PL18 1390 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 USP47Q96K76 1375 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 PDIA5Q14554 519 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 PREPLQ4J6C6 727 aaPredicted RBP10.03□□□□□ -0.8
TDP1-201ENST00000335725 CWC27Q6UX04 472 aaKnown RBP10.03□□□□□ -0.8
TDP1-201ENST00000335725 NSFL1CQ9UNZ2 370 aaKnown RBP10.03□□□□□ -0.8
TDP1-201ENST00000335725 NPHP1O15259 732 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 FAM163BP0C2L3 166 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 CPLX2Q6PUV4 134 aaKnown RBP10.03□□□□□ -0.8
TDP1-201ENST00000335725 SAAL1Q96ER3 474 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 LZTS2Q9BRK4 669 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 ZCCHC17Q9NP64 241 aaKnown RBP10.03□□□□□ -0.8
TDP1-201ENST00000335725 BLOC1S6Q9UL45 172 aa10.03□□□□□ -0.8
TDP1-201ENST00000335725 GPRASP1Q5JY77 1395 aa10.02□□□□□ -0.8
TDP1-201ENST00000335725 CLNS1AP54105 237 aaKnown RBP10.02□□□□□ -0.81
TDP1-201ENST00000335725 RTN2O75298 545 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 CD2BP2O95400 341 aaKnown RBP10.02□□□□□ -0.81
TDP1-201ENST00000335725 L2HGDHQ9H9P8 463 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 ARFGAP3Q9NP61 516 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.02□□□□□ -0.81
TDP1-201ENST00000335725 BCAR3O75815 825 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 HSP90B2PQ58FF3 399 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 IQCA1Q86XH1 822 aa10.02□□□□□ -0.81
TDP1-201ENST00000335725 MX1P20591 662 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 CCDC158Q5M9N0 1113 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 MFSD4BQ5TF39 518 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 ZSCAN25Q6NSZ9 544 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 NYAP1Q6ZVC0 841 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 MYLK4Q86YV6 388 aaPredicted RBP10.01□□□□□ -0.81
TDP1-201ENST00000335725 TRMT2AQ8IZ69 625 aaKnown RBP10.01□□□□□ -0.81
TDP1-201ENST00000335725 BICD2Q8TD16 824 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 MRFAP1L1Q96HT8 127 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 ZNF521Q96K83 1311 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 PAX3P23760 479 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 FILIP1LQ4L180 1135 aa10.01□□□□□ -0.81
TDP1-201ENST00000335725 FAM177A1Q8N128 213 aaPredicted RBP10.01□□□□□ -0.81
TDP1-201ENST00000335725 EPRSP07814 1512 aaKnown RBP10.01□□□□□ -0.81
TDP1-201ENST00000335725 ST18O60284 1047 aa10□□□□□ -0.81
TDP1-201ENST00000335725 OATP04181 439 aa10□□□□□ -0.81
TDP1-201ENST00000335725 CHMLP26374 656 aa10□□□□□ -0.81
TDP1-201ENST00000335725 DBN1Q16643 649 aa10□□□□□ -0.81
TDP1-201ENST00000335725 DZIP3Q86Y13 1208 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms