RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 ZBTB7BO15156 539 aaPredicted RBP17.74■□□□□ 0.43
VRK3-201ENST00000316763 EIF4A1P60842 406 aaKnown RBP17.74■□□□□ 0.43
VRK3-201ENST00000316763 NUCB1Q02818 461 aa17.74■□□□□ 0.43
VRK3-201ENST00000316763 SLC52A2Q9HAB3 445 aa17.74■□□□□ 0.43
VRK3-201ENST00000316763 MRC1P22897 1456 aa17.74■□□□□ 0.43
VRK3-201ENST00000316763 KAT6BQ8WYB5 2073 aa17.74■□□□□ 0.43
VRK3-201ENST00000316763 KDM3BQ7LBC6 1761 aa17.73■□□□□ 0.43
VRK3-201ENST00000316763 SCN11AQ9UI33 1791 aa17.73■□□□□ 0.43
VRK3-201ENST00000316763 ABCC4O15439 1325 aa17.73■□□□□ 0.43
VRK3-201ENST00000316763 NKX1-1Q15270 411 aaPredicted RBP17.73■□□□□ 0.43
VRK3-201ENST00000316763 GCC1Q96CN9 775 aa17.73■□□□□ 0.43
VRK3-201ENST00000316763 SIPA1L3O60292 1781 aaPredicted RBP17.73■□□□□ 0.43
VRK3-201ENST00000316763 RGS12O14924 1447 aa17.73■□□□□ 0.43
VRK3-201ENST00000316763 KCNQ3O43525 872 aa17.71■□□□□ 0.43
VRK3-201ENST00000316763 HOXB7P09629 217 aa17.71■□□□□ 0.43
VRK3-201ENST00000316763 FAM182BQ5T319 152 aa17.71■□□□□ 0.43
VRK3-201ENST00000316763 HEG1Q9ULI3 1381 aa17.71■□□□□ 0.43
VRK3-201ENST00000316763 KRT27Q7Z3Y8 459 aa17.7■□□□□ 0.42
VRK3-201ENST00000316763 CHD1LQ86WJ1 897 aa17.7■□□□□ 0.42
VRK3-201ENST00000316763 BCL11AQ9H165 835 aa17.7■□□□□ 0.42
VRK3-201ENST00000316763 NFATC2IPQ8NCF5 419 aa17.69■□□□□ 0.42
VRK3-201ENST00000316763 TOGARAM1Q9Y4F4 1720 aa17.68■□□□□ 0.42
VRK3-201ENST00000316763 ERVV-2B6SEH9 535 aa17.68■□□□□ 0.42
VRK3-201ENST00000316763 C22orf23Q9BZE7 217 aa17.68■□□□□ 0.42
VRK3-201ENST00000316763 CCDC30Q5VVM6 783 aa17.67■□□□□ 0.42
VRK3-201ENST00000316763 ZNF790Q6PG37 636 aa17.67■□□□□ 0.42
VRK3-201ENST00000316763 LNPKQ9C0E8 428 aa17.67■□□□□ 0.42
VRK3-201ENST00000316763 ITGB4P16144 1822 aa17.67■□□□□ 0.42
VRK3-201ENST00000316763 DOT1LQ8TEK3 1739 aa17.66■□□□□ 0.42
VRK3-201ENST00000316763 SLC4A2P04920 1241 aa17.66■□□□□ 0.42
VRK3-201ENST00000316763 MFAP1P55081 439 aaKnown RBP17.66■□□□□ 0.42
VRK3-201ENST00000316763 CABP4P57796 275 aa17.66■□□□□ 0.42
VRK3-201ENST00000316763 ANKRD45Q5TZF3 282 aa17.66■□□□□ 0.42
VRK3-201ENST00000316763 PTPRCP08575 1304 aa17.65■□□□□ 0.42
VRK3-201ENST00000316763 GIGYF1O75420 1035 aaPredicted RBP17.65■□□□□ 0.42
VRK3-201ENST00000316763 ACSBG1Q96GR2 724 aa17.65■□□□□ 0.42
VRK3-201ENST00000316763 CHMP4AQ9BY43 222 aa17.65■□□□□ 0.42
VRK3-201ENST00000316763 SBF2Q86WG5 1849 aa17.65■□□□□ 0.42
VRK3-201ENST00000316763 PRIM1P49642 420 aaKnown RBP17.64■□□□□ 0.42
VRK3-201ENST00000316763 STK31Q9BXU1 1019 aa17.64■□□□□ 0.42
VRK3-201ENST00000316763 BMP2KLQ5H9B9 411 aa17.64■□□□□ 0.41
VRK3-201ENST00000316763 HDGFL1Q5TGJ6 251 aa17.64■□□□□ 0.41
VRK3-201ENST00000316763 INTS3Q68E01 1043 aaKnown RBP17.64■□□□□ 0.41
VRK3-201ENST00000316763 C1orf115Q9H7X2 142 aa17.64■□□□□ 0.41
VRK3-201ENST00000316763 SLC39A6Q13433 755 aa17.63■□□□□ 0.41
VRK3-201ENST00000316763 FAM196AQ6ZSG2 479 aa17.63■□□□□ 0.41
VRK3-201ENST00000316763 BCL9O00512 1426 aa17.63■□□□□ 0.41
VRK3-201ENST00000316763 KCNQ2O43526 872 aa17.62■□□□□ 0.41
VRK3-201ENST00000316763 SYTL4Q96C24 671 aaPredicted RBP17.62■□□□□ 0.41
VRK3-201ENST00000316763 TBC1D2Q9BYX2 928 aa17.62■□□□□ 0.41
VRK3-201ENST00000316763 GSE1Q14687 1217 aa17.62■□□□□ 0.41
VRK3-201ENST00000316763 FRAT2O75474 233 aaPredicted RBP17.61■□□□□ 0.41
VRK3-201ENST00000316763 G2E3Q7L622 706 aa17.61■□□□□ 0.41
VRK3-201ENST00000316763 PIGBQ92521 554 aa17.61■□□□□ 0.41
VRK3-201ENST00000316763 TMOD3Q9NYL9 352 aa17.61■□□□□ 0.41
VRK3-201ENST00000316763 SIRT2Q8IXJ6 389 aa17.6■□□□□ 0.41
VRK3-201ENST00000316763 NECTIN2Q92692 538 aa17.6■□□□□ 0.41
VRK3-201ENST00000316763 ZNF496Q96IT1 587 aaPredicted RBP17.6■□□□□ 0.41
VRK3-201ENST00000316763 EIF5BO60841 1220 aaKnown RBP17.6■□□□□ 0.41
VRK3-201ENST00000316763 PTF1AQ7RTS3 328 aa17.6■□□□□ 0.41
VRK3-201ENST00000316763 EIF2S2P20042 333 aaKnown RBP17.59■□□□□ 0.41
VRK3-201ENST00000316763 FLIIQ13045 1269 aa17.59■□□□□ 0.41
VRK3-201ENST00000316763 TTC5Q8N0Z6 440 aa17.59■□□□□ 0.41
VRK3-201ENST00000316763 SLKQ9H2G2 1235 aaPredicted RBP17.59■□□□□ 0.41
VRK3-201ENST00000316763 NHSQ6T4R5 1651 aa17.59■□□□□ 0.41
VRK3-201ENST00000316763 EP400Q96L91 3159 aa17.58■□□□□ 0.41
VRK3-201ENST00000316763 PRAMEF22A3QJZ6 481 aa17.58■□□□□ 0.4
VRK3-201ENST00000316763 RPAP2Q8IXW5 612 aaPredicted RBP17.58■□□□□ 0.4
VRK3-201ENST00000316763 FMNL2Q96PY5 1086 aa17.58■□□□□ 0.4
VRK3-201ENST00000316763 CHPF2Q9P2E5 772 aa17.58■□□□□ 0.4
VRK3-201ENST00000316763 CACNA1FO60840 1977 aa17.58■□□□□ 0.4
VRK3-201ENST00000316763 SNRPA1P09661 255 aaKnown RBP17.57■□□□□ 0.4
VRK3-201ENST00000316763 RBM25P49756 843 aaKnown RBP17.57■□□□□ 0.4
VRK3-201ENST00000316763 ANTXR1Q9H6X2 564 aa17.57■□□□□ 0.4
VRK3-201ENST00000316763 DBF4Q9UBU7 674 aaPredicted RBP17.57■□□□□ 0.4
VRK3-201ENST00000316763 TRIM37O94972 964 aa17.57■□□□□ 0.4
VRK3-201ENST00000316763 PAPPAQ13219 1627 aa17.57■□□□□ 0.4
VRK3-201ENST00000316763 HSCBQ8IWL3 235 aa17.57■□□□□ 0.4
VRK3-201ENST00000316763 DCTPP1Q9H773 170 aa17.57■□□□□ 0.4
VRK3-201ENST00000316763 BTAF1O14981 1849 aa17.56■□□□□ 0.4
VRK3-201ENST00000316763 ANKRD44Q8N8A2 993 aa17.56■□□□□ 0.4
VRK3-201ENST00000316763 ASAP1Q9ULH1 1129 aa17.56■□□□□ 0.4
VRK3-201ENST00000316763 BCL11BQ9C0K0 894 aaPredicted RBP17.55■□□□□ 0.4
VRK3-201ENST00000316763 KCPQ6ZWJ8 1503 aa17.55■□□□□ 0.4
VRK3-201ENST00000316763 PHAXQ9H814 394 aaKnown RBP17.55■□□□□ 0.4
VRK3-201ENST00000316763 ATG3Q9NT62 314 aa17.55■□□□□ 0.4
VRK3-201ENST00000316763 UBR2Q8IWV8 1755 aa17.54■□□□□ 0.4
VRK3-201ENST00000316763 FKBP5Q13451 457 aaPredicted RBP17.54■□□□□ 0.4
VRK3-201ENST00000316763 PDIA6Q15084 440 aa17.54■□□□□ 0.4
VRK3-201ENST00000316763 DDX21Q9NR30 783 aaKnown RBP eCLIP17.53■□□□□ 0.4
VRK3-201ENST00000316763 C5P01031 1676 aa17.53■□□□□ 0.4
VRK3-201ENST00000316763 F6X3S4 739 aa17.53■□□□□ 0.4
VRK3-201ENST00000316763 HYPKQ9NX55 129 aa17.53■□□□□ 0.4
VRK3-201ENST00000316763 CCT4P50991 539 aaKnown RBP17.52■□□□□ 0.4
VRK3-201ENST00000316763 PROSER3Q2NL68 480 aa17.52■□□□□ 0.4
VRK3-201ENST00000316763 SNX21Q969T3 373 aa17.52■□□□□ 0.4
VRK3-201ENST00000316763 USP16Q9Y5T5 823 aa17.52■□□□□ 0.4
VRK3-201ENST00000316763 CDC45O75419 566 aa17.51■□□□□ 0.39
VRK3-201ENST00000316763 CEP85Q6P2H3 762 aa17.51■□□□□ 0.39
VRK3-201ENST00000316763 CHMP5Q9NZZ3 219 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms