RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 MEIS3Q99687 375 aa19.54■□□□□ 0.72
LSM6-201ENST00000296581 DDX21Q9NR30 783 aaKnown RBP eCLIP19.54■□□□□ 0.72
LSM6-201ENST00000296581 HYPKQ9NX55 129 aa19.54■□□□□ 0.72
LSM6-201ENST00000296581 TNS2Q63HR2 1409 aa19.54■□□□□ 0.72
LSM6-201ENST00000296581 RGS3P49796 1198 aa19.53■□□□□ 0.72
LSM6-201ENST00000296581 PDIA6Q15084 440 aa19.53■□□□□ 0.72
LSM6-201ENST00000296581 PROSER3Q2NL68 480 aa19.53■□□□□ 0.72
LSM6-201ENST00000296581 KCPQ6ZWJ8 1503 aa19.53■□□□□ 0.72
LSM6-201ENST00000296581 ANXA1P04083 346 aa19.53■□□□□ 0.72
LSM6-201ENST00000296581 SPATA31A5Q5VU36 1347 aa19.52■□□□□ 0.72
LSM6-201ENST00000296581 SPATA31A7Q8IWB4 1347 aa19.52■□□□□ 0.72
LSM6-201ENST00000296581 ADCY9O60503 1353 aa19.52■□□□□ 0.72
LSM6-201ENST00000296581 ITGB4P16144 1822 aa19.52■□□□□ 0.72
LSM6-201ENST00000296581 EXOC5O00471 708 aa19.51■□□□□ 0.71
LSM6-201ENST00000296581 RPAP2Q8IXW5 612 aaPredicted RBP19.51■□□□□ 0.71
LSM6-201ENST00000296581 ANKRD44Q8N8A2 993 aa19.51■□□□□ 0.71
LSM6-201ENST00000296581 DNAAF4Q8WXU2 420 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 GCC1Q96CN9 775 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 PI4KAP2A4QPH2 592 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 CEP85Q6P2H3 762 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 PI4KAP1Q8N8J0 262 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 USP16Q9Y5T5 823 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 SPATA31A6Q5VVP1 1343 aa19.5■□□□□ 0.71
LSM6-201ENST00000296581 PDE4AP27815 886 aa19.49■□□□□ 0.71
LSM6-201ENST00000296581 GNAI3P08754 354 aa19.49■□□□□ 0.71
LSM6-201ENST00000296581 TMOD3Q9NYL9 352 aa19.49■□□□□ 0.71
LSM6-201ENST00000296581 BEND3Q5T5X7 828 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 KSR2Q6VAB6 950 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 BARGINQ6ZT62 677 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 BACH2Q9BYV9 841 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 SRCIN1Q9C0H9 1055 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 NUCB1Q02818 461 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 UNC5CLQ8IV45 518 aa19.48■□□□□ 0.71
LSM6-201ENST00000296581 LRP10Q7Z4F1 713 aa19.47■□□□□ 0.71
LSM6-201ENST00000296581 ERBB4Q15303 1308 aa19.47■□□□□ 0.71
LSM6-201ENST00000296581 BCL9LQ86UU0 1499 aa19.47■□□□□ 0.71
LSM6-201ENST00000296581 GNAI2P04899 355 aa19.46■□□□□ 0.71
LSM6-201ENST00000296581 USP44Q9H0E7 712 aa19.46■□□□□ 0.71
LSM6-201ENST00000296581 DDX58O95786 925 aaKnown RBP19.45■□□□□ 0.7
LSM6-201ENST00000296581 PIGBQ92521 554 aa19.45■□□□□ 0.7
LSM6-201ENST00000296581 DCTPP1Q9H773 170 aa19.45■□□□□ 0.7
LSM6-201ENST00000296581 BCL9O00512 1426 aa19.45■□□□□ 0.7
LSM6-201ENST00000296581 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.45■□□□□ 0.7
LSM6-201ENST00000296581 FNBP4Q8N3X1 1017 aaPredicted RBP19.45■□□□□ 0.7
LSM6-201ENST00000296581 MAP3K2Q9Y2U5 619 aa19.45■□□□□ 0.7
LSM6-201ENST00000296581 DOT1LQ8TEK3 1739 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 DDB1Q16531 1140 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.44■□□□□ 0.7
LSM6-201ENST00000296581 VPS72Q15906 364 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 FAM161AQ3B820 660 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 NGLY1Q96IV0 654 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 C8orf37Q96NL8 207 aa19.44■□□□□ 0.7
LSM6-201ENST00000296581 IBTKQ9P2D0 1353 aaPredicted RBP19.43■□□□□ 0.7
LSM6-201ENST00000296581 ALDH1L1O75891 902 aa19.43■□□□□ 0.7
LSM6-201ENST00000296581 MYL6BP14649 208 aa19.43■□□□□ 0.7
LSM6-201ENST00000296581 CHD1LQ86WJ1 897 aa19.43■□□□□ 0.7
LSM6-201ENST00000296581 XAGE3Q8WTP9 111 aa19.42■□□□□ 0.7
LSM6-201ENST00000296581 PTCD1O75127 700 aaKnown RBP19.41■□□□□ 0.7
LSM6-201ENST00000296581 HMMRO75330 724 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 UBTFL1P0CB47 393 aaPredicted RBP19.41■□□□□ 0.7
LSM6-201ENST00000296581 C8orf34Q49A92 452 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 COPS6Q7L5N1 327 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 VSIG10Q8N0Z9 540 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 IL27Q8NEV9 243 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 ATG3Q9NT62 314 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 CCDC9Q9Y3X0 531 aaKnown RBP19.41■□□□□ 0.7
LSM6-201ENST00000296581 AIMP1Q12904 312 aaKnown RBP19.41■□□□□ 0.7
LSM6-201ENST00000296581 ASAP1Q9ULH1 1129 aa19.41■□□□□ 0.7
LSM6-201ENST00000296581 LINS1Q8NG48 757 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 NBPF26B4DH59 902 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 HSPA1LP34931 641 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 ATP8B2P98198 1209 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 NBPF14Q5TI25 921 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 ANKRD45Q5TZF3 282 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 NBPF10Q6P3W6 841 aaKnown RBP19.4■□□□□ 0.7
LSM6-201ENST00000296581 NBPF15Q8N660 670 aa19.4■□□□□ 0.7
LSM6-201ENST00000296581 LRRFIP2Q9Y608 721 aaKnown RBP19.4■□□□□ 0.7
LSM6-201ENST00000296581 ARFGEF2Q9Y6D5 1785 aa19.39■□□□□ 0.69
LSM6-201ENST00000296581 MARCH10Q8NA82 808 aaPredicted RBP19.39■□□□□ 0.69
LSM6-201ENST00000296581 LNPKQ9C0E8 428 aa19.39■□□□□ 0.69
LSM6-201ENST00000296581 RIC3Q7Z5B4 369 aa19.39■□□□□ 0.69
LSM6-201ENST00000296581 NBR1Q14596 966 aa19.38■□□□□ 0.69
LSM6-201ENST00000296581 TEX13AQ9BXU3 409 aaPredicted RBP19.38■□□□□ 0.69
LSM6-201ENST00000296581 KAT6BQ8WYB5 2073 aa19.38■□□□□ 0.69
LSM6-201ENST00000296581 NBPF7P0C2Y1 421 aaPredicted RBP19.37■□□□□ 0.69
LSM6-201ENST00000296581 PIP4K2AP48426 406 aaPredicted RBP19.37■□□□□ 0.69
LSM6-201ENST00000296581 ANKRD13DQ6ZTN6 518 aa19.37■□□□□ 0.69
LSM6-201ENST00000296581 METTL22Q9BUU2 404 aaPredicted RBP19.37■□□□□ 0.69
LSM6-201ENST00000296581 PRIM1P49642 420 aaKnown RBP19.36■□□□□ 0.69
LSM6-201ENST00000296581 UTYO14607 1347 aa19.36■□□□□ 0.69
LSM6-201ENST00000296581 CWF19L2Q2TBE0 894 aaKnown RBP19.36■□□□□ 0.69
LSM6-201ENST00000296581 NUP188Q5SRE5 1749 aa19.36■□□□□ 0.69
LSM6-201ENST00000296581 PNMA6EA0A0J9YXQ4 647 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 A1BGP04217 495 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 IGKV5-2P06315 115 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 PLBD2Q8NHP8 589 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 USP21Q9UK80 565 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 NEXNQ0ZGT2 675 aa19.35■□□□□ 0.69
LSM6-201ENST00000296581 FAM98CQ17RN3 349 aaKnown RBP19.35■□□□□ 0.69
LSM6-201ENST00000296581 SSH3Q8TE77 659 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms