RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 GNPATO15228 680 aa12.35□□□□□ -0.43
TPM3-201ENST00000271850 ATP6V1AP38606 617 aa12.35□□□□□ -0.43
TPM3-201ENST00000271850 EIF4G2P78344 907 aaKnown RBP eCLIP12.35□□□□□ -0.43
TPM3-201ENST00000271850 CICQ96RK0 1608 aaPredicted RBP12.34□□□□□ -0.43
TPM3-201ENST00000271850 IER5LQ5T953 404 aa12.34□□□□□ -0.43
TPM3-201ENST00000271850 PLCD3Q8N3E9 789 aa12.34□□□□□ -0.43
TPM3-201ENST00000271850 C4AP0C0L4 1744 aa12.34□□□□□ -0.43
TPM3-201ENST00000271850 PXDNLA1KZ92 1463 aa12.34□□□□□ -0.43
TPM3-201ENST00000271850 ADAMTS7Q9UKP4 1686 aa12.33□□□□□ -0.44
TPM3-201ENST00000271850 SENP3-EIF4A1A0A087X0R7 540 aa12.33□□□□□ -0.44
TPM3-201ENST00000271850 GRIN3BO60391 1043 aa12.33□□□□□ -0.44
TPM3-201ENST00000271850 COLQQ9Y215 455 aaPredicted RBP12.33□□□□□ -0.44
TPM3-201ENST00000271850 TJP1Q07157 1748 aa12.33□□□□□ -0.44
TPM3-201ENST00000271850 C10orf71Q711Q0 1435 aa12.32□□□□□ -0.44
TPM3-201ENST00000271850 ERVV-2B6SEH9 535 aa12.32□□□□□ -0.44
TPM3-201ENST00000271850 GIGYF1O75420 1035 aaPredicted RBP12.32□□□□□ -0.44
TPM3-201ENST00000271850 IL13P35225 146 aa12.32□□□□□ -0.44
TPM3-201ENST00000271850 AMER1Q5JTC6 1135 aaPredicted RBP12.32□□□□□ -0.44
TPM3-201ENST00000271850 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
TPM3-201ENST00000271850 PCDHB13Q9Y5F0 798 aa12.32□□□□□ -0.44
TPM3-201ENST00000271850 N4BP2Q86UW6 1770 aaPredicted RBP12.31□□□□□ -0.44
TPM3-201ENST00000271850 MMP10P09238 476 aa12.31□□□□□ -0.44
TPM3-201ENST00000271850 ZNF530Q6P9A1 599 aaPredicted RBP12.31□□□□□ -0.44
TPM3-201ENST00000271850 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
TPM3-201ENST00000271850 TRIM35Q9UPQ4 493 aa12.31□□□□□ -0.44
TPM3-201ENST00000271850 CNTNAP4Q9C0A0 1308 aa12.31□□□□□ -0.44
TPM3-201ENST00000271850 GYS1P13807 737 aa12.3□□□□□ -0.44
TPM3-201ENST00000271850 ARHGEF1Q92888 912 aaKnown RBP12.3□□□□□ -0.44
TPM3-201ENST00000271850 KIF7Q2M1P5 1343 aa12.3□□□□□ -0.44
TPM3-201ENST00000271850 SCN11AQ9UI33 1791 aa12.3□□□□□ -0.44
TPM3-201ENST00000271850 BRCA1P38398 1863 aaKnown RBP12.29□□□□□ -0.44
TPM3-201ENST00000271850 PLEKHO1Q53GL0 409 aaPredicted RBP12.29□□□□□ -0.44
TPM3-201ENST00000271850 RC3H1Q5TC82 1133 aaKnown RBP12.29□□□□□ -0.44
TPM3-201ENST00000271850 SULT6B1Q6IMI4 303 aa12.29□□□□□ -0.44
TPM3-201ENST00000271850 MORC1Q86VD1 984 aa12.29□□□□□ -0.44
TPM3-201ENST00000271850 MRC1P22897 1456 aa12.28□□□□□ -0.44
TPM3-201ENST00000271850 PER1O15534 1290 aaPredicted RBP12.28□□□□□ -0.44
TPM3-201ENST00000271850 HMGB2P26583 209 aaKnown RBP12.28□□□□□ -0.44
TPM3-201ENST00000271850 AMOTQ4VCS5 1084 aa12.28□□□□□ -0.44
TPM3-201ENST00000271850 NFATC2IPQ8NCF5 419 aa12.28□□□□□ -0.44
TPM3-201ENST00000271850 RTCBQ9Y3I0 505 aaKnown RBP12.28□□□□□ -0.44
TPM3-201ENST00000271850 RPS6KA4O75676 772 aa12.27□□□□□ -0.45
TPM3-201ENST00000271850 HSP90AB1P08238 724 aaKnown RBP12.27□□□□□ -0.45
TPM3-201ENST00000271850 TRAPPC3LQ5T215 181 aa12.27□□□□□ -0.45
TPM3-201ENST00000271850 SRP68Q9UHB9 627 aaKnown RBP12.27□□□□□ -0.45
TPM3-201ENST00000271850 COL3A1P02461 1466 aaPredicted RBP12.27□□□□□ -0.45
TPM3-201ENST00000271850 KCPQ6ZWJ8 1503 aa12.27□□□□□ -0.45
TPM3-201ENST00000271850 A0A0G2JLW4 131 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 PTCD1O75127 700 aaKnown RBP12.26□□□□□ -0.45
TPM3-201ENST00000271850 KCNA3P22001 575 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 CRKLP46109 303 aaKnown RBP12.26□□□□□ -0.45
TPM3-201ENST00000271850 MTHFSP49914 203 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 CABP4P57796 275 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 DDR1Q08345 913 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 INTS5Q6P9B9 1019 aaKnown RBP12.26□□□□□ -0.45
TPM3-201ENST00000271850 ZNF526Q8TF50 670 aaPredicted RBP12.26□□□□□ -0.45
TPM3-201ENST00000271850 LGR6Q9HBX8 967 aa12.26□□□□□ -0.45
TPM3-201ENST00000271850 VIRMAQ69YN4 1812 aaKnown RBP12.25□□□□□ -0.45
TPM3-201ENST00000271850 KIF3CO14782 793 aa12.25□□□□□ -0.45
TPM3-201ENST00000271850 FKBP8Q14318 412 aa12.25□□□□□ -0.45
TPM3-201ENST00000271850 CDAN1Q8IWY9 1227 aa12.25□□□□□ -0.45
TPM3-201ENST00000271850 DPEP1P16444 411 aa12.24□□□□□ -0.45
TPM3-201ENST00000271850 NLGN1Q8N2Q7 840 aa12.24□□□□□ -0.45
TPM3-201ENST00000271850 CCER1Q8TC90 406 aaPredicted RBP12.24□□□□□ -0.45
TPM3-201ENST00000271850 USP42Q9H9J4 1324 aaKnown RBP12.24□□□□□ -0.45
TPM3-201ENST00000271850 KNSTRNQ9Y448 316 aa12.24□□□□□ -0.45
TPM3-201ENST00000271850 HMOX1P09601 288 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 TGFB2P61812 414 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 SLC39A6Q13433 755 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 AKAP4Q5JQC9 854 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 C1orf141Q5JVX7 400 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 DNAJC10Q8IXB1 793 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 SLAIN1Q8ND83 568 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 SLC52A2Q9HAB3 445 aa12.23□□□□□ -0.45
TPM3-201ENST00000271850 GPBP1L1Q9HC44 474 aaPredicted RBP12.23□□□□□ -0.45
TPM3-201ENST00000271850 RNMTO43148 476 aaKnown RBP12.22□□□□□ -0.45
TPM3-201ENST00000271850 RFC4P35249 363 aa12.22□□□□□ -0.45
TPM3-201ENST00000271850 MTHFSDQ2M296 383 aaKnown RBP12.22□□□□□ -0.45
TPM3-201ENST00000271850 UBR2Q8IWV8 1755 aa12.22□□□□□ -0.45
TPM3-201ENST00000271850 ARFGEF1Q9Y6D6 1849 aa12.21□□□□□ -0.45
TPM3-201ENST00000271850 SOS1Q07889 1333 aaPredicted RBP12.21□□□□□ -0.45
TPM3-201ENST00000271850 POLRMTO00411 1230 aaKnown RBP12.21□□□□□ -0.45
TPM3-201ENST00000271850 PLCG2P16885 1265 aa12.21□□□□□ -0.45
TPM3-201ENST00000271850 FAM212AQ96EL1 285 aa12.21□□□□□ -0.45
TPM3-201ENST00000271850 BCL2L12Q9HB09 334 aa12.21□□□□□ -0.45
TPM3-201ENST00000271850 BCS1LQ9Y276 419 aa12.21□□□□□ -0.45
TPM3-201ENST00000271850 NRXN2Q9P2S2 1712 aa12.2□□□□□ -0.46
TPM3-201ENST00000271850 CYP19A1P11511 503 aaPredicted RBP12.2□□□□□ -0.46
TPM3-201ENST00000271850 TM4SF1P30408 202 aa12.2□□□□□ -0.46
TPM3-201ENST00000271850 CC2D1BQ5T0F9 858 aaKnown RBP12.2□□□□□ -0.46
TPM3-201ENST00000271850 TMEM106CQ9BVX2 250 aa12.2□□□□□ -0.46
TPM3-201ENST00000271850 CCDC87Q9NVE4 849 aa12.2□□□□□ -0.46
TPM3-201ENST00000271850 ZBTB1Q9Y2K1 713 aa12.2□□□□□ -0.46
TPM3-201ENST00000271850 AFDNP55196 1824 aaKnown RBP12.19□□□□□ -0.46
TPM3-201ENST00000271850 CHRNA5P30532 468 aa12.19□□□□□ -0.46
TPM3-201ENST00000271850 PARP3Q9Y6F1 533 aa12.19□□□□□ -0.46
TPM3-201ENST00000271850 SIPA1L3O60292 1781 aaPredicted RBP12.18□□□□□ -0.46
TPM3-201ENST00000271850 HSPA6P17066 643 aa12.18□□□□□ -0.46
TPM3-201ENST00000271850 NUBP1P53384 320 aa12.18□□□□□ -0.46
TPM3-201ENST00000271850 USPL1Q5W0Q7 1092 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms