RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 POLA2Q14181 598 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 KDM3BQ7LBC6 1761 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 NFAT5O94916 1531 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 NCLP19338 710 aaKnown RBP19.98■□□□□ 0.79
HOXD3-201ENST00000249440 ZNF445P59923 1031 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 IL17RAQ96F46 866 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 LGR6Q9HBX8 967 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 PSME1Q06323 249 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 UNC5CLQ8IV45 518 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 ANP32BQ92688 251 aaKnown RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 PALD1Q9ULE6 856 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 ADGRL3Q9HAR2 1447 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 NASPP49321 788 aaPredicted RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 CUL4AQ13619 759 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 CAVIN1Q6NZI2 390 aaKnown RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 RHPN1Q8TCX5 695 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 DNAAF4Q8WXU2 420 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 SRGAP3O43295 1099 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 PRPF40AO75400 957 aaKnown RBP19.96■□□□□ 0.79
HOXD3-201ENST00000249440 TEFQ10587 303 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 AKAP4Q5JQC9 854 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 KIF1BPQ96EK5 621 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 INTS4Q96HW7 963 aaKnown RBP19.96■□□□□ 0.79
HOXD3-201ENST00000249440 CHPF2Q9P2E5 772 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 CCDC173Q0VFZ6 552 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 NUTM1Q86Y26 1132 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 PI4KAP2A4QPH2 592 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 ESPNB1AK53 854 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 BEND3Q5T5X7 828 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 PI4KAP1Q8N8J0 262 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 ORAI2Q96SN7 254 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 BTBD11A6QL63 1104 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 NBPF7P0C2Y1 421 aaPredicted RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 ZSCAN23Q3MJ62 389 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 HSP90AB4PQ58FF6 505 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 LMO7Q8WWI1 1683 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 PHRF1Q9P1Y6 1649 aaKnown RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 PLEKHO1Q53GL0 409 aaPredicted RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 ESCO1Q5FWF5 840 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 RGPD2P0DJD1 1756 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 AMOTQ4VCS5 1084 aa19.93■□□□□ 0.78
HOXD3-201ENST00000249440 PI4K2BQ8TCG2 481 aa19.93■□□□□ 0.78
HOXD3-201ENST00000249440 ZBTB7CA1YPR0 619 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 HSPA4P34932 840 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 ZNF530Q6P9A1 599 aaPredicted RBP19.92■□□□□ 0.78
HOXD3-201ENST00000249440 DDX17Q92841 729 aaKnown RBP19.92■□□□□ 0.78
HOXD3-201ENST00000249440 PPP1R9BQ96SB3 815 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 BRD1O95696 1058 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 XPCQ01831 940 aaPredicted RBP19.91■□□□□ 0.78
HOXD3-201ENST00000249440 CNTROBQ8N137 903 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 DBF4Q9UBU7 674 aaPredicted RBP19.91■□□□□ 0.78
HOXD3-201ENST00000249440 KCNQ3O43525 872 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 GPT2Q8TD30 523 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 MPRIPQ6WCQ1 1025 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 LRRC59Q96AG4 307 aaKnown RBP19.9■□□□□ 0.78
HOXD3-201ENST00000249440 C1orf141Q5JVX7 400 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 UPF3BQ9BZI7 483 aaKnown RBP19.9■□□□□ 0.78
HOXD3-201ENST00000249440 IL25Q9H293 177 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 NCAPD2Q15021 1401 aa19.89■□□□□ 0.77
HOXD3-201ENST00000249440 ADCY9O60503 1353 aa19.89■□□□□ 0.77
HOXD3-201ENST00000249440 SGSM2O43147 1006 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 MAP4K4O95819 1239 aaPredicted RBP19.88■□□□□ 0.77
HOXD3-201ENST00000249440 NOL8Q76FK4 1167 aaKnown RBP19.88■□□□□ 0.77
HOXD3-201ENST00000249440 MBD3O95983 291 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 HDAC5Q9UQL6 1122 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 ERBB4Q15303 1308 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 TTC41PQ6P2S7 1318 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 RAD50Q92878 1312 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 RNMTO43148 476 aaKnown RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 ANXA1P04083 346 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 MTX1Q13505 466 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 FOXD4L5Q5VV16 416 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 FOXD4L4Q8WXT5 416 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 GCP02774 474 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 OS9Q13438 667 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 C19orf44Q9H6X5 657 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 USP42Q9H9J4 1324 aaKnown RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 OVOS2A0A0G2JMS6 1433 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 ALDH1L1O75891 902 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 GLRX3O76003 335 aaKnown RBP19.86■□□□□ 0.77
HOXD3-201ENST00000249440 KIAA1211Q6ZU35 1233 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 ARHGEF25Q86VW2 580 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 C9orf78Q9NZ63 289 aaPredicted RBP19.86■□□□□ 0.77
HOXD3-201ENST00000249440 PLEKHG5O94827 1062 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 PRIM1P49642 420 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 CLASRPQ8N2M8 674 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 GIGYF1O75420 1035 aaPredicted RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 KSR2Q6VAB6 950 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 RBM27Q9P2N5 1060 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 MAP3K2Q9Y2U5 619 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 CHAMP1Q96JM3 812 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 LSG1Q9H089 658 aaKnown RBP19.84■□□□□ 0.77
HOXD3-201ENST00000249440 TMEM63CQ9P1W3 806 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 CRYBG1Q9Y4K1 1723 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 LRSAM1Q6UWE0 723 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 RBSNQ9H1K0 784 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 SNX14Q9Y5W7 946 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 WDR33Q9C0J8 1336 aaKnown RBP19.83■□□□□ 0.77
HOXD3-201ENST00000249440 CWC27Q6UX04 472 aaKnown RBP19.83■□□□□ 0.76
HOXD3-201ENST00000249440 ERC1Q8IUD2 1116 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms