RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 TRERF1Q96PN7 1200 aa23.2■■□□□ 1.3
SOX4-201ENST00000244745 FBLN1P23142 703 aa23.19■■□□□ 1.3
SOX4-201ENST00000244745 KIF18AQ8NI77 898 aa23.19■■□□□ 1.3
SOX4-201ENST00000244745 SDSP20132 328 aa23.19■■□□□ 1.3
SOX4-201ENST00000244745 LARP1Q6PKG0 1096 aaKnown RBP23.18■■□□□ 1.3
SOX4-201ENST00000244745 TFIP11Q9UBB9 837 aaKnown RBP23.18■■□□□ 1.3
SOX4-201ENST00000244745 EPB41L2O43491 1005 aaKnown RBP23.18■■□□□ 1.3
SOX4-201ENST00000244745 LRSAM1Q6UWE0 723 aa23.18■■□□□ 1.3
SOX4-201ENST00000244745 AIDAQ96BJ3 306 aa23.18■■□□□ 1.3
SOX4-201ENST00000244745 TMX3Q96JJ7 454 aa23.18■■□□□ 1.3
SOX4-201ENST00000244745 TRMT1Q9NXH9 659 aaKnown RBP23.18■■□□□ 1.3
SOX4-201ENST00000244745 GOLGA6L10A6NI86 522 aa23.18■■□□□ 1.3
SOX4-201ENST00000244745 ZC3H6P61129 1189 aaKnown RBP23.17■■□□□ 1.3
SOX4-201ENST00000244745 ZHX3Q9H4I2 956 aa23.17■■□□□ 1.3
SOX4-201ENST00000244745 USP8P40818 1118 aa23.17■■□□□ 1.3
SOX4-201ENST00000244745 MEX3CQ5U5Q3 659 aaKnown RBP23.17■■□□□ 1.3
SOX4-201ENST00000244745 MPRIPQ6WCQ1 1025 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 PLCD4Q9BRC7 762 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 POLR3GO15318 223 aaPredicted RBP23.16■■□□□ 1.3
SOX4-201ENST00000244745 IFIT1P09914 478 aaKnown RBP23.16■■□□□ 1.3
SOX4-201ENST00000244745 CCT2P78371 535 aaKnown RBP23.16■■□□□ 1.3
SOX4-201ENST00000244745 EVI5LQ96CN4 794 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 ATP2B2Q01814 1243 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 C8orf76Q96K31 380 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 PRIMPOLQ96LW4 560 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 RAI14Q9P0K7 980 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 CASQ1P31415 396 aa23.16■■□□□ 1.3
SOX4-201ENST00000244745 CEP131Q9UPN4 1083 aa23.15■■□□□ 1.3
SOX4-201ENST00000244745 METTL24Q5JXM2 366 aa23.15■■□□□ 1.3
SOX4-201ENST00000244745 ARHGAP29Q52LW3 1261 aa23.15■■□□□ 1.3
SOX4-201ENST00000244745 DDX19AQ9NUU7 478 aaKnown RBP23.15■■□□□ 1.3
SOX4-201ENST00000244745 FBXO31Q5XUX0 539 aaPredicted RBP23.15■■□□□ 1.3
SOX4-201ENST00000244745 CD109Q6YHK3 1445 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 SEC24BO95487 1268 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 UBE2HP62256 183 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 IDI1Q13907 227 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 SOGA3Q5TF21 947 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 TMX1Q9H3N1 280 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 LRP2BPQ9P2M1 347 aa23.14■■□□□ 1.3
SOX4-201ENST00000244745 KIAA1328Q86T90 577 aa23.14■■□□□ 1.29
SOX4-201ENST00000244745 FSIP1Q8NA03 581 aa23.14■■□□□ 1.29
SOX4-201ENST00000244745 RLBP1P12271 317 aa23.14■■□□□ 1.29
SOX4-201ENST00000244745 MRPL50Q8N5N7 158 aaKnown RBP23.14■■□□□ 1.29
SOX4-201ENST00000244745 HMGB1P09429 215 aaKnown RBP23.13■■□□□ 1.29
SOX4-201ENST00000244745 KCNH5Q8NCM2 988 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 CTAGE5O15320 804 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 ZNF830Q96NB3 372 aaPredicted RBP23.13■■□□□ 1.29
SOX4-201ENST00000244745 MAP3K2Q9Y2U5 619 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 ZSCAN12O43309 604 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 URI1O94763 535 aaPredicted RBP23.13■■□□□ 1.29
SOX4-201ENST00000244745 PPP1R42Q7Z4L9 355 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 SNX21Q969T3 373 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 GIMAP6Q6P9H5 292 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 MEIS3Q99687 375 aa23.13■■□□□ 1.29
SOX4-201ENST00000244745 UVSSAQ2YD98 709 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 DHX37Q8IY37 1157 aaKnown RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 ECHDC1Q9NTX5 307 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 C16orf71Q8IYS4 520 aaPredicted RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 ARHGAP45Q92619 1136 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 UNC13AQ9UPW8 1703 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 TOP1P11387 765 aaKnown RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 GTF2F1P35269 517 aaKnown RBP eCLIP23.12■■□□□ 1.29
SOX4-201ENST00000244745 CENPHQ9H3R5 247 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 LUC7LQ9NQ29 371 aaKnown RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 CNPY2Q9Y2B0 182 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 TCOF1Q13428 1488 aaKnown RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 EIF2AK4Q9P2K8 1649 aaKnown RBP23.12■■□□□ 1.29
SOX4-201ENST00000244745 SYCP1Q15431 976 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 AKAP2Q9Y2D5 859 aa23.12■■□□□ 1.29
SOX4-201ENST00000244745 HCLS1P14317 486 aaPredicted RBP23.11■■□□□ 1.29
SOX4-201ENST00000244745 EIF5P55010 431 aaKnown RBP23.11■■□□□ 1.29
SOX4-201ENST00000244745 KLHL10Q6JEL2 608 aa23.11■■□□□ 1.29
SOX4-201ENST00000244745 STX1AQ16623 288 aa23.11■■□□□ 1.29
SOX4-201ENST00000244745 NUP160Q12769 1436 aa23.11■■□□□ 1.29
SOX4-201ENST00000244745 ZSCAN22P10073 491 aaPredicted RBP23.11■■□□□ 1.29
SOX4-201ENST00000244745 IQCEQ6IPM2 695 aa23.11■■□□□ 1.29
SOX4-201ENST00000244745 ERLIN2O94905 339 aa23.1■■□□□ 1.29
SOX4-201ENST00000244745 CCDC148Q8NFR7 591 aa23.1■■□□□ 1.29
SOX4-201ENST00000244745 TXLNBQ8N3L3 684 aa23.1■■□□□ 1.29
SOX4-201ENST00000244745 TMC6Q7Z403 805 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 USP48Q86UV5 1035 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 DBF4Q9UBU7 674 aaPredicted RBP23.09■■□□□ 1.29
SOX4-201ENST00000244745 GOLGA8BA8MQT2 603 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 BIN1O00499 593 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 TTC21BQ7Z4L5 1316 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 HYPKQ9NX55 129 aa23.09■■□□□ 1.29
SOX4-201ENST00000244745 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
SOX4-201ENST00000244745 PIK3R4Q99570 1358 aa23.08■■□□□ 1.29
SOX4-201ENST00000244745 ANKLE2Q86XL3 938 aa23.08■■□□□ 1.29
SOX4-201ENST00000244745 SSBP05455 408 aaKnown RBP eCLIP23.08■■□□□ 1.29
SOX4-201ENST00000244745 NECAB1Q8N987 351 aa23.08■■□□□ 1.29
SOX4-201ENST00000244745 PPFIA3O75145 1194 aa23.08■■□□□ 1.28
SOX4-201ENST00000244745 AMOTQ4VCS5 1084 aa23.08■■□□□ 1.28
SOX4-201ENST00000244745 FANCAO15360 1455 aa23.08■■□□□ 1.28
SOX4-201ENST00000244745 C8orf58Q8NAV2 365 aa23.07■■□□□ 1.28
SOX4-201ENST00000244745 ESYT1Q9BSJ8 1104 aa23.07■■□□□ 1.28
SOX4-201ENST00000244745 GBP3Q9H0R5 595 aa23.07■■□□□ 1.28
SOX4-201ENST00000244745 DUOX2Q9NRD8 1548 aa23.07■■□□□ 1.28
SOX4-201ENST00000244745 PDE1AP54750 535 aa23.07■■□□□ 1.28
SOX4-201ENST00000244745 POLR3AO14802 1390 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms