RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PIGQQ9BRB3 760 aa6.64□□□□□ -1.35
NUP54-215ENST00000514313 TRBV2A0A0J9YWF9 115 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 TMEM129A0AVI4 362 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 SMCHD1A6NHR9 2005 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 ZNF197O14709 1029 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 DFFBO76075 338 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 RAF1P04049 648 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 DNA2P51530 1060 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 SLC3A1Q07837 685 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 P2RY6Q15077 328 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 EXT1Q16394 746 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 TOR1AIP1Q5JTV8 583 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 PIGZQ86VD9 579 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 EXOC6Q8TAG9 804 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 KIAA1524Q8TCG1 905 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 FCAMRQ8WWV6 532 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 NAP1L3Q99457 506 aaPredicted RBP6.63□□□□□ -1.35
NUP54-215ENST00000514313 CDCA3Q99618 268 aaPredicted RBP6.63□□□□□ -1.35
NUP54-215ENST00000514313 NACAP1Q9BZK3 213 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 XPO4Q9C0E2 1151 aaKnown RBP6.63□□□□□ -1.35
NUP54-215ENST00000514313 CARD9Q9H257 536 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 TMOD3Q9NYL9 352 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 DONSONQ9NYP3 566 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 FLRT3Q9NZU0 649 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.63□□□□□ -1.35
NUP54-215ENST00000514313 SLC12A6Q9UHW9 1150 aa6.63□□□□□ -1.35
NUP54-215ENST00000514313 HOOK1Q9UJC3 728 aaKnown RBP6.63□□□□□ -1.35
NUP54-215ENST00000514313 KIAA1217Q5T5P2 1943 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 C2orf92A0A1B0GVN3 265 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 CIDEAO60543 219 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 NUDT17P0C025 328 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 AMD1P17707 334 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 CEACAM8P31997 349 aaPredicted RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 NR0B1P51843 470 aaKnown RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 ZNF585BQ52M93 769 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 DNAJC21Q5F1R6 531 aaKnown RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 XKR6Q5GH73 641 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 SPSB3Q6PJ21 355 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 ZNF771Q7L3S4 317 aaPredicted RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 G2E3Q7L622 706 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 MIER3Q7Z3K6 550 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 C5orf24Q7Z6I8 188 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 THEM5Q8N1Q8 247 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 OR7A2PQ8NGA2 310 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 SENP5Q96HI0 755 aaPredicted RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 PKP2Q99959 881 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 FAM213AQ9BRX8 229 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 TEX13AQ9BXU3 409 aaPredicted RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 KRT23Q9C075 422 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 THAP2Q9H0W7 228 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 HSD3B7Q9H2F3 369 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 RPF1Q9H9Y2 349 aaKnown RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 ZFP57Q9NU63 452 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 ZCCHC3Q9NUD5 404 aaKnown RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 HPF1Q9NWY4 346 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 C19orf25Q9UFG5 118 aaPredicted RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 COLEC10Q9Y6Z7 277 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 MYH14Q7Z406 1995 aaKnown RBP6.62□□□□□ -1.35
NUP54-215ENST00000514313 PCSK5Q92824 1860 aa6.62□□□□□ -1.35
NUP54-215ENST00000514313 IGHV4-61A0A0C4DH41 118 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 MTMR11A4FU01 709 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 SLC15A5A6NIM6 579 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 GLRA3O75311 464 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 PRDM1O75626 825 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 IGHV4-59P01825 116 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 ATP1A1P05023 1023 aaKnown RBP6.61□□□□□ -1.35
NUP54-215ENST00000514313 YES1P07947 543 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 RBMS1P29558 406 aaKnown RBP6.61□□□□□ -1.35
NUP54-215ENST00000514313 OR3A3P47888 321 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 LBX1P52954 281 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 ATXN3P54252 364 aaPredicted RBP6.61□□□□□ -1.35
NUP54-215ENST00000514313 PDLIM3Q53GG5 364 aaPredicted RBP6.61□□□□□ -1.35
NUP54-215ENST00000514313 LCN1P1Q5VSP4 162 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 MFSD7Q6UXD7 560 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 B3GLCTQ6Y288 498 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 KIRREL3Q8IZU9 778 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 GBP7Q8N8V2 638 aaPredicted RBP6.61□□□□□ -1.35
NUP54-215ENST00000514313 OR4C3Q8NH37 302 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 MEIS3Q99687 375 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 DPEP2Q9H4A9 486 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 KCNMB3Q9NPA1 279 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 SPASTQ9UBP0 616 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 TRIM10Q9UDY6 481 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 IL36AQ9UHA7 158 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 UBQLN2Q9UHD9 624 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 MAN1B1Q9UKM7 699 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 NCKAP1Q9Y2A7 1128 aa6.61□□□□□ -1.35
NUP54-215ENST00000514313 GREB1LQ9C091 1923 aaPredicted RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 SNURFLB1AK76 121 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 INSIG1O15503 277 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 PSMD3O43242 534 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 KIF5CO60282 957 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 NGFP01138 241 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 PTMAP06454 111 aaKnown RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 GPIP06744 558 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 SFNP31947 248 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 SRP54P61011 504 aaKnown RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 HERV-K104P61576 105 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 MYL7Q01449 175 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 GK2Q14410 553 aaPredicted RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms